Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00058 ATGGGATACGGCAGGCTCAACGAAACCGACCCTGGCGGCACTTCCTCCGACGCACCTTCCCACCTCTCCCACCATGCCGCTTCTCCCAACCCACGGAGAAGCCGCCTTCTCCTTATCTCCCTCCTCTCTCTCATTCTCATCGTCGCTGCCGCTGTCTCTGCCACGTTTCTCGTCGGCCTCCGAACCGCCTCCTCCGTCCGATCCGACCCCAATCTCCCTCGAAAACCGACTCAGGCCATTTCCAAGGCCTGCAGCCGAACTCGCTTCCCGACTCTCTGTGTCAACTCGCTCCTCGATTTCCCTGGATCTCTGAACGCCAATGAACAGGATCTCGTCCACATTTCCTTTAACATGACTCTCCAGCATCTCAACAAAGCCCTCTACTTCTCCTCTGGAATCTCCTCTCTGCAAATGGATCTTCGCGTACGCTCCGCCTACGATGCCTGTCTTGAACTCCTCGACGACTCTGTCGACGCCCTTACCCGCTCCTTGCAGTCCGTCGCGCCCTCTTCCTCCAACGGCGGTCCTCAACGCCTTGGCTCCTCCGATGACGTCATCACCTGGCTCAGCGCTGCCCTTACCAATCAAGACACGTGTACGGACGGATTCTCCCAACTCTCCGGCTCTGTCAAAGACCAAATGGCCGATAAACTCCACAATTTGTCCGAACTCGTCAGCAATTGCTTGGCACTGTTTTCCGGCAGTGTAACGAGCGATTTCTCCGGAGTGCCGATTCAGAACAAGCGCCGGTTGATGAACGCCGGCGAAAACGAGGATGCTTCCGGTAACTTCCCCGGCTGGATGAGTCGGAGAGAGAGGAGGTTACTGACGTTGCCGGTGGGGGCGTTACAGGCCGATATTGTGGTTTCTCAGAACGGAAGCGGAACGGTGAAGACGATCGCGGAAGCGATCAAAAAGGCGCCGCAGTACAGTAACAGAAGGACGATCATATACGTGATGGCAGGAAGGTACGAAGAGAAAAATCTGAAGGTGGGGAGGAAGAAATGGAACCTGATGTTTGTTGGGGATGGCAAGGGTAAAACTGTCATTTCTGGTGGTAAGAGCATCTTTGACAACGTCACAACCTTTCACACGGCGTCGTTTGCGGCCACCGGCGCTGGTATAATCTTAAGGGACATGACATTTGAGAATTGGGCGGGGCCTGGCCGGCACCAGGCAGTTGCACTTCGAGTTGGCGGCGACCACGCCGTGGTGTACCGCTGCAACATAATTGGCTATCAAGACACTCTCTACGTCCATTCCAACCGCCAGTTCTACCGGGAGTGTGACATTTATGGGACGGTGGATTTCATCTTCGGCAATGCGGCGGTGGTGTTTCAGAACTGCAGCATCTACGCCCGAAAGGCAATGGACCTTCAAAAGAACACACTCACCGCCCAAAACCGGAAGGATCCCAATCAGAACACTGGAATCTCCATCCATGCGTGTCGGATTTTGGCCGCCTCCGATCTGGCGTCGTCCAATAGCAGCAACCCGACCTATTTGGGGCGTCCCTGGAAATTATACTCCAGAGTCGTGTTCATGCTATCGTACATAGGGAGCCACGTGCACCCACGCGGTTGGCTGGAGTGGAATGCCACGTTTGCGCTGGACACGCTGTATTATGGGGAGTATATGAATTACGGACCGGGTGGGGCGGTGGGTCAAAGGGTGACATGGCCTGGGTATCGGGTCATAACTTCCACGGTGGAGGCGAGTAAGTTCACGGTGGCGCAGTTCATTTACGGCTCGTCGTGGTTGCCGTCCACGGGAGTTGCATTCCTGGGAGGGTTAAATGTGTAA 1803 55.46 MGYGRLNETDPGGTSSDAPSHLSHHAASPNPRRSRLLLISLLSLILIVAAAVSATFLVGLRTASSVRSDPNLPRKPTQAISKACSRTRFPTLCVNSLLDFPGSLNANEQDLVHISFNMTLQHLNKALYFSSGISSLQMDLRVRSAYDACLELLDDSVDALTRSLQSVAPSSSNGGPQRLGSSDDVITWLSAALTNQDTCTDGFSQLSGSVKDQMADKLHNLSELVSNCLALFSGSVTSDFSGVPIQNKRRLMNAGENEDASGNFPGWMSRRERRLLTLPVGALQADIVVSQNGSGTVKTIAEAIKKAPQYSNRRTIIYVMAGRYEEKNLKVGRKKWNLMFVGDGKGKTVISGGKSIFDNVTTFHTASFAATGAGIILRDMTFENWAGPGRHQAVALRVGGDHAVVYRCNIIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSIYARKAMDLQKNTLTAQNRKDPNQNTGISIHACRILAASDLASSNSSNPTYLGRPWKLYSRVVFMLSYIGSHVHPRGWLEWNATFALDTLYYGEYMNYGPGGAVGQRVTWPGYRVITSTVEASKFTVAQFIYGSSWLPSTGVAFLGGLNV 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 242264 245230 - CmoCh16G000580.1 Cmo16g00058 399093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00058 600 CDD PMEI-like_3 83 233 - -
Cmo16g00058 600 SUPERFAMILY Pectin lyase-like 282 596 IPR011050 -
Cmo16g00058 600 MobiDBLite consensus disorder prediction 9 23 - -
Cmo16g00058 600 SMART PMEI_2 75 231 IPR006501 GO:0004857
Cmo16g00058 600 ProSitePatterns Pectinesterase signature 2. 431 440 IPR033131 -
Cmo16g00058 600 Gene3D Invertase/pectin methylesterase inhibitor family protein 77 234 IPR035513 -
Cmo16g00058 600 Pfam Pectinesterase 286 583 IPR000070 GO:0030599|GO:0042545
Cmo16g00058 600 PANTHER PECTINESTERASE 26 598 - -
Cmo16g00058 600 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 233 IPR035513 -
Cmo16g00058 600 Gene3D - 280 598 IPR012334 -
Cmo16g00058 600 PANTHER PECTINESTERASE 26 598 - -
Cmo16g00058 600 Pfam Plant invertase/pectin methylesterase inhibitor 79 231 IPR006501 GO:0004857
Cmo16g00058 600 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 232 IPR006501 GO:0004857
Cmo16g00058 600 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01145 Cmo16g00058 CCT
Cmo15g01089 Cmo16g00058 CCT
Cmo16g00058 Cmo18g01346 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00058 Cmo-Chr16:242264 Cmo17g01039 Cmo-Chr17:8822967 6.72E-162 dispersed
Cmo15g01089 Cmo-Chr15:7241794 Cmo16g00058 Cmo-Chr16:242264 0 wgd
Cmo16g00058 Cmo-Chr16:242264 Cmo18g01346 Cmo-Chr18:12739181 0 wgd
Cmo16g00058 Cmo-Chr16:242264 Cmo02g01145 Cmo-Chr2:6934865 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00058 - - csv:101214987 1070.07