Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00071 ATGGGTGCGCCAAAGGGCTTTGATTTGTTAATTCATTGGCATTTTGTAATCTGTTTTTCACCAATCTTGTTTTACTGTTGTTCATTCCACAATCTCCATGTTTTGCTGAAAGGAAAATCCCTGCTCCTAATTTTCCTTCCCTTCACTTTCGGTCTTCCCGCCCTCCGCCGCACAGTGCTCTGGAGATCGATAATGGGACTCTCCGGCCGGCTTTCCGGTCACCGGAACTCCGTACAAGGTTCCGATTCTCACAATTACACTTCATGGCTGAAACAATATCCCAGTGGTTTGGAATCGTTTGAGAGCATAATGAAAGAGCTACCGAGGAAGAAGATTGTGGTGTTCTTGGATTACGATGGAACCCTTTCTCCCATTGTGGATGATCCTGATCGAGCTTTCATGTCTCCTGAGATGAGAGAAGCTGTAAGAGAAGTGGCAAAATGCTTTCCAACAGCCATAATAAGCGGAAGAAGCCGAGAAAAAGTAAAGGAGTTCGTGAAATTGAGGAATCTGCACTATGCTGGGAGCCATGGATTAGACATTATGGCTCCAAATTCGGACAATGAGGCTAATGGGGTTTCCTATCAACCAGCCAAGAAGTTTTTACCAGAAATTCAACAAATAAAACGCGCATTAGAGGAAGAAAGTAGAAAGATCGAAGGTGCATTGGTGGAGGATAATACGTTTTGTGTTTCTGTACACTTTCGGCACGTGCACGAAAGGGATTTGGGGAAATTAGAAAAGAAGGTAGAGACTGTTATGGAAAACTATCCTGATTTTCATGTAACGCAGGGCAAAAAGGTTATGGAAATAAGGCCGACCATTAATTGGAACAAAGGGCATGCAATGGAGTATTATCTGCACACTCTCGGACATAACGACACGGACGATGTGGTTCCGTTGTACATTGGCGATGATCAAACGGACGAGGACGCTTTCAAGGTAATACAAAGGAAAGGACAAGGAATTGCGATACTCGTGGCATCCATTCCAAAGCACACAAACGCTTCCTACTCGTTGAAGGACCCATCGGAGAGACTTCGAGAGCCCATTTCTTCATTCTTGTCTGCTCGCGGCCAACCTCTTTGCCGTCGTTTTGTCGTCTCCGGTGCAACTCCCGTGAGACCTATTGCCTATTGGACTCTGTTTCCGATCCGATCCTTGTACGGATACCATGAGCCCTCTTTAGGTTTGAGCTTCTGTTGA 1206 45.36 MGAPKGFDLLIHWHFVICFSPILFYCCSFHNLHVLLKGKSLLLIFLPFTFGLPALRRTVLWRSIMGLSGRLSGHRNSVQGSDSHNYTSWLKQYPSGLESFESIMKELPRKKIVVFLDYDGTLSPIVDDPDRAFMSPEMREAVREVAKCFPTAIISGRSREKVKEFVKLRNLHYAGSHGLDIMAPNSDNEANGVSYQPAKKFLPEIQQIKRALEEESRKIEGALVEDNTFCVSVHFRHVHERDLGKLEKKVETVMENYPDFHVTQGKKVMEIRPTINWNKGHAMEYYLHTLGHNDTDDVVPLYIGDDQTDEDAFKVIQRKGQGIAILVASIPKHTNASYSLKDPSERLREPISSFLSARGQPLCRRFVVSGATPVRPIAYWTLFPIRSLYGYHEPSLGLSFC 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 320941 330775 + CmoCh16G000710.1 Cmo16g00071 399106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00071 401 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 80 346 - -
Cmo16g00071 401 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 80 346 IPR044651 GO:0004805|GO:0005992
Cmo16g00071 401 Coils Coil 205 225 - -
Cmo16g00071 401 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 114 318 IPR006379 -
Cmo16g00071 401 CDD HAD_TPP 113 345 - -
Cmo16g00071 401 Pfam Trehalose-phosphatase 115 344 IPR003337 GO:0003824|GO:0005992
Cmo16g00071 401 Gene3D - 114 340 IPR023214 -
Cmo16g00071 401 Gene3D - 198 274 - -
Cmo16g00071 401 SUPERFAMILY HAD-like 113 345 IPR036412 -
Cmo16g00071 401 TIGRFAM T6PP: trehalose-phosphatase 110 347 IPR003337 GO:0003824|GO:0005992
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00071 K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] - csv:101204169 416.387
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00071 Cmo-Chr16:320941 Cmo16g00205 Cmo-Chr16:898131 3.55E-98 dispersed
Cmo16g00071 Cmo-Chr16:320941 Cmo04g00865 Cmo-Chr4:4319682 1.44E-98 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g876 . . . . Bpe03g00178 . . . Cmo16g00071 . . . . . . . Cpe14g00053 Bhi01g01461 . . . . Mch10g0084 . . . . . . . . . . . . . . . Cme06g01082 . . . . . . . . . . . Cma16g00067 . Car16g00059 . . . . . . . . . . Cla05g00952 Cam05g1042 Cec05g1047 Cco05g1041 Clacu05g1033 Cmu05g0983 Cre05g1062 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010851 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00071 Cmo_Chr16 FPKM 3.215709 3.854177 0.84395 0.255091 0.566517 0.0 0.664324 1.050808 1.166475 1.076005