Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00084 ATGATGAAGAATAGCTTCATCTTCCTCGAGATTATATTGTTTTTAGCAATCATCTGGCCGGGGGTTCTCACCGAGCCAGTTGAAGACAAGCAAGCTTTGCTGGATTTCTTCCATACTATCCCCCACTCGCCTTCTCTCAATTGGAATGAGAATAGTTCTGTGTGCAATTCCTGGACGGGAGTGTTTTGCAACTCTGATGAGTCCAGAGTAGTAGCCCTACGATTACCCGGCAATGGTCTGCTCGGCCCTATCCCTGTGAATACTCTTAGCCGCCTATCTGCGCTGGAGACTCTAAGCCTTAGGTTGAATAGGATAACAGGATCTTTCCCTTCTGATTTTTCGAAGCTACAAAACTTGAGTTCCCTGTATCTGCAATACAACGAGTTTTCTGGTCCTTTGCCTTTAGATTTTTCAATTTGGAATAACCTTAGTGTCATTGATCTATCCAACAATCTCTTTAATGGGAGTATTCCTTCCTCTATCTCAAAATTGAGTCATTTGACAGTTCTGAATCTTGCAAACAACTCGTTTACAGGCGAAATTCCGGACCTCGATATTCCGAGTTTGCAACGGTTAGATCTGTCTAATAATAATCTTACTGGAAATGTGCCTCATTCTCTTCAACGATTTCCGAGTTGGGTGTTTGTCGGCAACAATGTTACTGCAGAACATGTTGCCATTCCCCCATCTATTCCCCTCCAGCCTCCCAGTACTCAACCGACAAGAAAAGACAAAGGGCTAAGTGAATCTGCAATACTTGGTATTGCAATTGGTGGTTCTGTTATTGGGTTTCTTTTGCTAGTTGTTCTGTTGACTGCTTGTTGGTTGAAAAAAGGAAAAGAACTGAGTTCTTCCATGGAGACCAAAAAGAAGGAAACATTTGTGATGAAAAGGGGTTTTGAGAGCCAAGAACAAAAGAACAACCTTAATTTCTTTCAGGATTCTAATCTTGCATTTGACTTGGAAGACCTGTTGAGAGCATCGGCTGAGGTTCTTGGGAAGGGAACGTTCGGCGTGAGCTACAAGGCAGCTTTGGAGGACTCGACGACCGTGGTAGTGAAGAGGCTGAATCAGGTGAATGTTGGAAAGCGAGAATTTGAACAGCAGATGGAGTTGATTGGAAAAATTAAGCACGAGAACGTCGTTTCTTTACGAGCATACTATTATTCCAAGGATGAGAAGCTTACAGTCTATGACTACTATGGACAAGGGAGCGTGTCTGCAATGTTACACAGTAAAGAAGGAGATGGTTTACGTGCGTTAGATTGGGATACTCGGATGAAGATTGCGATTGGAGCAGCTCGAGGTCTTGCTCATATTCACACAGAAAATGGTGGAAAAAGTTGCCATGGAAACATCAGAGCCTCAAACATTTTCCTCAACACTAACGGATACGGCTGTGTATCCGACGTCGGGTTGGCTGCATTGATGAACTCAACTCCAGTACCAGCCACAAGAACTCCTGGTTACCGAGCGCCTGAATTGACCGACAGTCGTAGAGTATCGGAAGCAGCTGATGTGTACAGTTTTGGGGTGGTGCTGCTGGAGCTTCTGACTGGAAAGTCCCCCATACACGTTGAAGGTTGTAATGAAGTTGTTAATTTGGTGAGATGGGTGAACTCTGTGGTGAGGGAGGAATGGACAGCAGAAGTGTTCGATGTGGAGCTTCTCAAGTATCCAAATATAGAAGAAGAAATGGTAGAGATGCTGCAAATTGGGTTGTCTTGTGTTGCCAAAATGCCAGAGCAGAGGCCGAAAATGATGGATATCGCGTCGAGAATCGAGCAAGTTCGGCAACTGAGTACCGGAACCCGACCATCGACTGGGTCGAAATCAGCATGGGTAGATTTAGATGATAAAAAAGAAAACGGTTCTATAAAATTCATTCCGCACCAAATCACCGTTAGTTTTCCATCTCTGTCGTTTCTCGTCCTCATCCTCTCTTCGTCATCTTCACAAACCCTCACACCAGACCTACAGCGCCTTCACGAGGACCTCTCTCTTCTTTTTCGGATGGCGTCTAAGAGGATCTTGAAGGAACTCAAGGATTTGCAGAAGGACCCTCCTACATCATGTAGCGCTGGCCCAGTTGCCGAAGATATGTTTCATTGGCAAGCTACCATAATGGGTCCTCCAGACAGTCCTTATGCTGGGGGTGTTTTCCTTGTCACCATTCATTTTCCTCCGGATTATCCTTTTAAGCCTCCTAAGGTGGCATTTAGAACAAAGGTTTTCCACCCAAATATCAACAGCAATGGTAGTATTTGCCTTGACATTTTGAAAGAGCAGTGGAGCCCTGCCCTAACTATTTCCAAGGTGTTACTTTCAATCTGTTCTCTGTTGACGGACCCAAATCCGGATGACCCACTGGTGCCTGAGATCGCTCACATGTACAAGACTGACAGGAACAAATACGAGACAACTGCTAGGAGCTGGACGCAGAAGTACGCCATGGGGTGA 2460 45.04 MMKNSFIFLEIILFLAIIWPGVLTEPVEDKQALLDFFHTIPHSPSLNWNENSSVCNSWTGVFCNSDESRVVALRLPGNGLLGPIPVNTLSRLSALETLSLRLNRITGSFPSDFSKLQNLSSLYLQYNEFSGPLPLDFSIWNNLSVIDLSNNLFNGSIPSSISKLSHLTVLNLANNSFTGEIPDLDIPSLQRLDLSNNNLTGNVPHSLQRFPSWVFVGNNVTAEHVAIPPSIPLQPPSTQPTRKDKGLSESAILGIAIGGSVIGFLLLVVLLTACWLKKGKELSSSMETKKKETFVMKRGFESQEQKNNLNFFQDSNLAFDLEDLLRASAEVLGKGTFGVSYKAALEDSTTVVVKRLNQVNVGKREFEQQMELIGKIKHENVVSLRAYYYSKDEKLTVYDYYGQGSVSAMLHSKEGDGLRALDWDTRMKIAIGAARGLAHIHTENGGKSCHGNIRASNIFLNTNGYGCVSDVGLAALMNSTPVPATRTPGYRAPELTDSRRVSEAADVYSFGVVLLELLTGKSPIHVEGCNEVVNLVRWVNSVVREEWTAEVFDVELLKYPNIEEEMVEMLQIGLSCVAKMPEQRPKMMDIASRIEQVRQLSTGTRPSTGSKSAWVDLDDKKENGSIKFIPHQITVSFPSLSFLVLILSSSSSQTLTPDLQRLHEDLSLLFRMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 387197 393036 - CmoCh16G000840.1 Cmo16g00084 399119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00084 819 Pfam Ubiquitin-conjugating enzyme 676 812 IPR000608 -
Cmo16g00084 819 Gene3D Transferase(Phosphotransferase) domain 1 402 612 - -
Cmo16g00084 819 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Cmo16g00084 819 PANTHER OS05G0588300 PROTEIN 16 613 - -
Cmo16g00084 819 Pfam Protein tyrosine and serine/threonine kinase 330 593 IPR001245 GO:0004672|GO:0006468
Cmo16g00084 819 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 745 760 IPR023313 -
Cmo16g00084 819 Gene3D Ribonuclease Inhibitor 139 227 IPR032675 -
Cmo16g00084 819 Pfam Leucine rich repeat 72 128 IPR001611 GO:0005515
Cmo16g00084 819 Gene3D Phosphorylase Kinase; domain 1 291 400 - -
Cmo16g00084 819 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 672 818 IPR000608 -
Cmo16g00084 819 SMART ubc_7 675 818 - -
Cmo16g00084 819 SUPERFAMILY L domain-like 39 212 - -
Cmo16g00084 819 Gene3D Ubiquitin Conjugating Enzyme 668 819 IPR016135 -
Cmo16g00084 819 CDD UBCc 674 813 IPR000608 -
Cmo16g00084 819 ProSiteProfiles Protein kinase domain profile. 326 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00084 819 SUPERFAMILY UBC-like 670 818 IPR016135 -
Cmo16g00084 819 SUPERFAMILY Protein kinase-like (PK-like) 330 594 IPR011009 -
Cmo16g00084 819 Pfam Leucine Rich Repeat 188 209 IPR001611 GO:0005515
Cmo16g00084 819 Gene3D Ribonuclease Inhibitor 28 138 IPR032675 -
Cmo16g00084 819 PANTHER LRR RECEPTOR-LIKE KINASE 16 613 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00967 Cmo-Chr1:6176573 Cmo16g00084 Cmo-Chr16:387197 1.04E-93 dispersed
Cmo02g00688 Cmo-Chr2:4351587 Cmo16g00084 Cmo-Chr16:387197 6.29E-101 dispersed
Cmo02g01124 Cmo-Chr2:6821866 Cmo16g00084 Cmo-Chr16:387197 3.86E-72 dispersed
Cmo02g01437 Cmo-Chr2:8475644 Cmo16g00084 Cmo-Chr16:387197 5.10E-103 dispersed
Cmo02g01438 Cmo-Chr2:8481763 Cmo16g00084 Cmo-Chr16:387197 0 dispersed
Cmo03g00296 Cmo-Chr3:4179682 Cmo16g00084 Cmo-Chr16:387197 1.23E-94 dispersed
Cmo09g01151 Cmo-Chr9:7186495 Cmo16g00084 Cmo-Chr16:387197 2.24E-92 dispersed
Cmo11g01736 Cmo-Chr11:12278441 Cmo16g00084 Cmo-Chr16:387197 1.51E-96 dispersed
Cmo16g00084 Cmo-Chr16:387197 Cmo20g00327 Cmo-Chr20:1600161 0 dispersed
Cmo19g00745 Cmo-Chr19:7641007 Cmo16g00084 Cmo-Chr16:387197 3.32E-95 dispersed
Cmo20g00326 Cmo-Chr20:1597080 Cmo16g00084 Cmo-Chr16:387197 4.77E-101 dispersed
Cmo01g01131 Cmo-Chr1:9318615 Cmo16g00084 Cmo-Chr16:387197 6.61E-66 transposed
Cmo14g02145 Cmo-Chr14:15451325 Cmo16g00084 Cmo-Chr16:387197 3.01E-102 wgd
Cmo15g01332 Cmo-Chr15:9137087 Cmo16g00084 Cmo-Chr16:387197 0 wgd
Cmo16g00084 Cmo-Chr16:387197 Cmo18g01322 Cmo-Chr18:12578033 0 wgd
Cmo16g00084 Cmo-Chr16:387197 Cmo02g01122 Cmo-Chr2:6813662 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74942 PF07714 PK_Tyr_Ser-Thr 1.60E-32 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00084 - - csv:101207123 1057.74