Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00086 ATGGAGGACATATGGGGTGCGTTCTGTGGAGGGTATGATTGTTCTAGTGGTACAGACAGACCTTGTGGTTTTGACTATGGATTTCTTTCTCATTCCTCTTCATGTATTACTCAAGCCTTGATCATTTCGTTTGATTTTCTACTCTTGATCTTGCTTGTTTCCAATATTGTGGGGAAGTCAATGAAAAGAGTTCACATGTCGAATCGAATTCGTGGCGGCTCGGGTTTGCTGAGTTTGTCTGCTATCTTCAATGGCTGTGTTGGATTGGTGTATCTTAGTTTAGGCATTTGGAGTTTGGTGGAGAAGTTGAGGAAAGATCACAGTGCTTTGCCTTTGCAGCTGTGGTTATCAGCTTCCTTCCATGGCTTCACATGGTTGTTGGTGAGCTCTATTATTAGCTGCTGGAGTAAACAGCTTCCAAGACCCTTCTTGCGCTTATTGTCCATTGTGGCATTCTTGTTTGCTGGGATTATTTGTATCCTTTCACTTTTTGATGCTGTTTCGAGCAAAATGGCATCAGCAAAGATGGTGTTAGATGTTCTATCTGTTCTAGGATCGGTTCTATTATTGTTTTGCTGTTTTGGATGTTTTAGTCTCCAAGATAGTGAGGAGAGCATCAATGGGAATGGTCTTTACACCCCATTAAATGGTGAGGCCAATGAAAGCGGTAAGCTTGATCCTGTTACTCCATTAGACAAAGCTGGATTGTTGGGTAAAATTTCGTTTTGGTGGATGAATCCTTTAATGAAAAGAGGGAAGAAGAAGACTCTCAACTGTGAAGATATACCGATGATGCGCGAGGCGGATCGAGCTGAAAGTTGTTACTTACAGTTCGTAAACCAAATGAATGAGCACAAAAGAAAAGAGCAAAGTTCCCAACCATCAGTCCTCAAAGTCATCCTTTCATGCCATCGGAGGGACATATTCTTGTCTGGATTTTTCGCTTTGTTGAAGATACTCTTCGTCTCTGCTGGTCCTCTGCTTCTTAATGCCTTCATTTTGGTCGCTCAGGGACATCAAAGCTTCAAATATGAAGGTCTTGTGCTTGCCATTTCACTTTTCTTCTCAAAAAGCATCGAATCCATATCACAAAGGCAATGGTACTTCAGAGCCAGGCTTGTTGGTCTTAAAGTCAGGTCTTTGCTCTCAGCTGCCATTTACAAGAAGCAATTGCGTTTGTCCAATGAAGCTAAGTTGATGCACTCGAGTGGCGAAATCATGAACTACGTCACGGTCGACGCCTATAGGATCGGAGAATTCTCATTTTGGTTCCATCAAACTTGGACCACGAGTGTTCAGCTCTGCATTGCACTTCTGATCCTCTACAAAGCAGTGGGAATTGCAGCCATTGCCTCCTTCATCGTGATAGTTCTATGCGTAGTTGGCAATACTCCAATTGCCAAGCTACAACATAAGTTTCAGAGTAAATTAATGGCAGCACAAGACGAGAGATTGAAGACGTTCACTGAGGCTCTTGTAAACATGAAAGTCTTGAAGTTATATGCTTGGGAAACCCATTTCAAGAATGTAATTGAAAAGCTAAGAAAGGAAGAGCACAAGTGGTTGTCAGCCGTGCAGTATCGAAAGGGATATAATGGCATTCTCTTTTGGTCATCTCCTGTTATTGTCTCTATTGCAACCTTTGGAGCTTGTAGCTTTTTGAACATACCGCTACATGCCAATAATGTCTTCACCTTTGTGTCTGCATTGCGTCTTGTTCAAGAACCTGTTAGATCCATGGGGGATGTCATTGCGGCGATCATTCAAGCACGGGTCTCATTTACACGGATTGTTAACTTCCTGGAGGCACCTGAGCTGCAAAGTTCAAGTGTTTGTAGAAAGCAAATAAAGATGAATGATGACTGCTCCATTCGGATCAGCTCAGCATCTTTCTCATGGGAAGAGAGTTCAATGAAGCCTACTCTTCATAACATTAATCTAGAGGTCAGGCCAGGTTCAAAGCTTGCAATTTGTGGAGAAGTTGGCTCAGGGAAATCAACTCTTCTAGCAGCCATTCTTGGTGAAATTCCAAATGTTGAGGGAAATATTGAAGTTCATGGAAGGATTGCTTATGTGTCTCAATCAGCATGGATCCAAACAGGGTCCATTCGAGATAACATTTTATTCGGCTCTGAAATGGAGAATTGGAGATATCAAGAAACACTCGAGAAGTGTTCATTGGTGAAGGATCTTGAGTTACTCCCTTATGGTGATCTCACTGAGATTGGTGAAAGAGGAGTAAATCTCAGCGGTGGACAAAAGCAGAGGATTCAACTCGCACGAGCACTGTATCAAAATGCCGATATATATCTTTTGGATGATCCGTTCAGTGCTGTTGATGCTCATACTGCCACAAGCTTGTTCAATGGATATGTTGTGGAAGCTCTCTCGGGAAAAACAGTTCTTCTTGTGACTCATCAAGTTGATTTCCTGCCTGCTTTTGATTCTGTCCTGCTGATGTCCGACGGGGAAATTCTAGAAGCGGGCCCTTACGATCAGTTGTTGGCACATAGCAAAGAATTTCAGGACCTTGTCAATGCACACAAAGAGACTGCTGGTACTGAAAGGCTTGCAGATTTCTCTGCTATCAAGAGCTTAAGAACATCTTGTAAAGAGATTAAGACATCTTATACAGAGAAGCTGTCTGTAGCAGCATCTGATGATGCTAATCAGTTAATCAAGCAGGAGGAACGCGAAGTGGGGGACTCAGGATTCAAGCCTTATATTCAGTATCTGAATCAGAACAAAGGGTTCTTATTCTTTTCCTTGGATGTTCTCTCCCATTTAGCATTTGTGGCATGTGGGATAACGCAAAACTCTTGGATGGCTTCCAACATTGACAGTCCCAATGTCAGCAACACACGCTTGATCGTAGTTTACTTGTTGATTGGAGTTTCTTCAATATCATTCTTGGTTGCTAGATCAGTTTTAACAGCTCTTTTGGGATTGCAATCATCAAAATCATTGTTTTCTCAGCTACTCACATCTCTTTTTCGCTCGCCGATGTCCTTCTATGACTCCACACCTCTTGGAAGGATACTCAGTCGGGTCTCAATGGATCTTAGCATCGTTGATCTTGATGTCCCATTTAGCTTAATATTTGCTGTGGGTGCGACCGCCAATGCTTATGCTGCTCTTGGAGTTTTAGCCGTCATCACCTGGCAAGTTCTGTTCATCTCCATACCAACAATCGTTTTGGCAATTTGCTTGCAGAGATACTATTTCGCTTCTGCTAAAGAACTCATGCGTCTTAATGGAACAACGAAGTCAATAGTAGCTAACCATTTGTCGGAATCCATAGCTGGAGCAGTGACAATTAGAGCTTTTGCAGAGGAAGAGCGATTCTTTAAGAAAAATCTTGAATTTGTTGATGGAAATGCCAGTCCATTTTTTCACAATTTTTCAGCCAACGAGTGGCTGATACAGCGGTTAGAGATGCTCAGCGCAGTGGTTCTTGCCTCCGCTGCCTTTTGCATAGTGTTGCTACCGACTGGAAGCTTCAGCCCTGGTTTCGTTGGAATGGCACTCTCTTATGGCCTTTCTTTGAATGTATCACTGGTCTTCTCCATCCAGAATCAATGTAATCTAGCCAATCACATCATTTCTGTAGAGAGATTAAACCAATACATGCATTTATCAAGTGAGGCTCCTGAAATTATCGAAGAAAACCGTCCCCCGACCAACTGGCCTTCTGTCGGAAAAGTGGAGATAATCGACTTGAAGATTCGGTACAGACCCAATTCGCCCCTTGTTCTTCATGGTATTAGCTGCACGTTTGAAGGAGGACATAAGATTGGGATTGTTGGTCGAACTGGGAGTGGGAAATCTACTCTTTTAAGTGCCATATTCCGCTTGGTTGAGCCAGCGGGAGGGAAGATTTTAGTGGATGGTATCGATATCTGCTCGATTGGACTTCATGACCTGCGTTCACGCTTTGGAATTATACCTCAAGATCCAACCCTCTTTAAAGGGACTGTTAGATACAATTTGGACCCCTTAGTTCAGCATTCTGATGATGAAATATGGGAGGTTCTTGGAAAGTGTCAACTAAGAGAGGCTGTGGAAGAGAAAGAAGCGGGATTGGATTCCTTGGTTGTGGAAGATGGCTCAAACTGGAGCATGGGACAGCGCCAACTTTTCTGTTTGGGACGCGCACTGTTGAGGAGAAGTCGAATACTAGTGCTTGACGAAGCAACTGCCTCGATCGACAATGCCACGGATATGATTCTGCAGAAAACTATTCGATCCGAGTTCGCAGACTGTACTGTGATTACAGTTGCTCATAGAATACCAACTGTTATGGATTGCACAATGGTGCTTGCTATCAGTGATGGGAGAATAGCAGAATATGAGGAACCGAGCACATTGATCAAGAGAGAAGGGTCTCTATTTGGACAGCTTGTGAAAGAGTACTGGTCTCACTCACCATCTGCAGAATGA 4440 43.11 MEDIWGAFCGGYDCSSGTDRPCGFDYGFLSHSSSCITQALIISFDFLLLILLVSNIVGKSMKRVHMSNRIRGGSGLLSLSAIFNGCVGLVYLSLGIWSLVEKLRKDHSALPLQLWLSASFHGFTWLLVSSIISCWSKQLPRPFLRLLSIVAFLFAGIICILSLFDAVSSKMASAKMVLDVLSVLGSVLLLFCCFGCFSLQDSEESINGNGLYTPLNGEANESGKLDPVTPLDKAGLLGKISFWWMNPLMKRGKKKTLNCEDIPMMREADRAESCYLQFVNQMNEHKRKEQSSQPSVLKVILSCHRRDIFLSGFFALLKILFVSAGPLLLNAFILVAQGHQSFKYEGLVLAISLFFSKSIESISQRQWYFRARLVGLKVRSLLSAAIYKKQLRLSNEAKLMHSSGEIMNYVTVDAYRIGEFSFWFHQTWTTSVQLCIALLILYKAVGIAAIASFIVIVLCVVGNTPIAKLQHKFQSKLMAAQDERLKTFTEALVNMKVLKLYAWETHFKNVIEKLRKEEHKWLSAVQYRKGYNGILFWSSPVIVSIATFGACSFLNIPLHANNVFTFVSALRLVQEPVRSMGDVIAAIIQARVSFTRIVNFLEAPELQSSSVCRKQIKMNDDCSIRISSASFSWEESSMKPTLHNINLEVRPGSKLAICGEVGSGKSTLLAAILGEIPNVEGNIEVHGRIAYVSQSAWIQTGSIRDNILFGSEMENWRYQETLEKCSLVKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATSLFNGYVVEALSGKTVLLVTHQVDFLPAFDSVLLMSDGEILEAGPYDQLLAHSKEFQDLVNAHKETAGTERLADFSAIKSLRTSCKEIKTSYTEKLSVAASDDANQLIKQEEREVGDSGFKPYIQYLNQNKGFLFFSLDVLSHLAFVACGITQNSWMASNIDSPNVSNTRLIVVYLLIGVSSISFLVARSVLTALLGLQSSKSLFSQLLTSLFRSPMSFYDSTPLGRILSRVSMDLSIVDLDVPFSLIFAVGATANAYAALGVLAVITWQVLFISIPTIVLAICLQRYYFASAKELMRLNGTTKSIVANHLSESIAGAVTIRAFAEEERFFKKNLEFVDGNASPFFHNFSANEWLIQRLEMLSAVVLASAAFCIVLLPTGSFSPGFVGMALSYGLSLNVSLVFSIQNQCNLANHIISVERLNQYMHLSSEAPEIIEENRPPTNWPSVGKVEIIDLKIRYRPNSPLVLHGISCTFEGGHKIGIVGRTGSGKSTLLSAIFRLVEPAGGKILVDGIDICSIGLHDLRSRFGIIPQDPTLFKGTVRYNLDPLVQHSDDEIWEVLGKCQLREAVEEKEAGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRSEFADCTVITVAHRIPTVMDCTMVLAISDGRIAEYEEPSTLIKREGSLFGQLVKEYWSHSPSAE 1479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 397796 404009 + CmoCh16G000860.1 Cmo16g00086 399121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00086 1479 SUPERFAMILY ABC transporter transmembrane region 297 602 IPR036640 GO:0005524|GO:0016021
Cmo16g00086 1479 SUPERFAMILY ABC transporter transmembrane region 925 1218 IPR036640 GO:0005524|GO:0016021
Cmo16g00086 1479 CDD ABCC_MRP_domain2 1233 1453 - -
Cmo16g00086 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 956 1198 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo16g00086 1479 Gene3D - 599 865 IPR027417 -
Cmo16g00086 1479 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 69 1479 - -
Cmo16g00086 1479 SMART AAA_5 651 824 IPR003593 -
Cmo16g00086 1479 SMART AAA_5 1261 1454 IPR003593 -
Cmo16g00086 1479 CDD ABCC_MRP_domain1 624 824 - -
Cmo16g00086 1479 Gene3D ABC transporter type 1, transmembrane domain 884 1216 IPR036640 GO:0005524|GO:0016021
Cmo16g00086 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 624 847 IPR003439 GO:0005524
Cmo16g00086 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1225 1462 IPR027417 -
Cmo16g00086 1479 Gene3D ABC transporter type 1, transmembrane domain 299 598 IPR036640 GO:0005524|GO:0016021
Cmo16g00086 1479 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 69 1479 - -
Cmo16g00086 1479 ProSitePatterns ABC transporters family signature. 749 763 IPR017871 GO:0005524
Cmo16g00086 1479 CDD ABC_6TM_ABCC_D2 917 1210 IPR044726 GO:0140359
Cmo16g00086 1479 CDD ABC_6TM_ABCC_D1 310 597 IPR044746 GO:0140359
Cmo16g00086 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 589 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo16g00086 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 620 847 IPR027417 -
Cmo16g00086 1479 Gene3D - 1218 1470 IPR027417 -
Cmo16g00086 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1235 1469 IPR003439 GO:0005524
Cmo16g00086 1479 Pfam ABC transporter 1252 1400 IPR003439 GO:0005524
Cmo16g00086 1479 Pfam ABC transporter 642 776 IPR003439 GO:0005524
Cmo16g00086 1479 Pfam ABC transporter transmembrane region 308 576 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo16g00086 1479 Pfam ABC transporter transmembrane region 920 1178 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00086 K05666 ABCC2; ATP-binding cassette, subfamily C (CFTR/MRP), member 2 - csv:101210136 2557.71
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo16g00086 Cmo18g01320 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00071 Cmo-Chr7:428389 Cmo16g00086 Cmo-Chr16:397796 0 dispersed
Cmo16g00086 Cmo-Chr16:397796 Cmo17g01323 Cmo-Chr17:10387653 0 dispersed
Cmo19g00369 Cmo-Chr19:3406203 Cmo16g00086 Cmo-Chr16:397796 0 dispersed
Cmo08g00731 Cmo-Chr8:4607834 Cmo16g00086 Cmo-Chr16:397796 0 transposed
Cmo16g00086 Cmo-Chr16:397796 Cmo18g01320 Cmo-Chr18:12565352 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g846 . . . Bda07g01915 Bpe03g00167 . . . Cmo16g00086 Cmo18g01320 . . . . . . Cpe14g00066 Bhi01g01434 . . . Hepe07g0101 Mch10g0103 . . . . . . . . Cone1ag0952 Cone5ag0661 . . Lsi05g01169 . . Cme06g01064 . Blo09g00046 . . . . . . . . . Cma16g00082 Cma18g01291 Car16g00072 Car18g01208 Cpe09g00051 . . . . . . . . Cla05g00937 Cam05g1026 Cec05g1030 Cco05g1026 Clacu05g1015 Cmu05g0968 Cre05g1049 . Csa03g02180 Chy06g01273 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00086 Cmo_Chr16 FPKM 21.954487 21.97294 15.235436 15.835508 53.689041 60.960464 54.296936 36.528355 34.239834 34.875267