Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00105 ATGGCGGACGTGCAGATGGCTGATGCTGAGACCTTCGCCTTCCAGGCCGAGATTAACCAGCTTCTCAGTTTGATTATCAATACTTTCTACAGCAACAAGGAGATTTTCCTTCGAGAGCTTATCAGCAACTCCTCTGACGCGTTGGACAAGATTCGATATGAGAGTTTGACTGATAAGAGCAAACTTGACGCTCAACCAGAGCTTTTCATCAGAATTGTTCCGGACAAGGACAACAAAACTCTCTCCGTCATTGATAGTGGAGTCGGAATGACTAAAGCAGATCTGGTGAATAACTTGGGAACCATCGCAAGGTCGGGGACCAAAGAATTCATGGAGGCATTGCAGGCCGGCGCCGATGTCAGCATGATCGGTCAATTCGGTGTAGGGTTCTATTCGGCTTACCTTGTGGCCGAGAAGGTGATTGTGACCACAAAGCACAATGACGACGAGCAATACGTATGGGAATCGCAGGCCGGTGGTTCCTTCACTGTCACAAGGGACGTCAGTGGAGAGCAACTCGGAAGGGGTACCAAGATCACACTCTTCCTCAAGGAGGATCAGTTGGAGTATTTGGAAGAGAGAAGGATCAAGGACCTCGTGAAGAAGCACTCTGAGTTCATCAGCTATCCCATCTATCTGTGGACCGAGAAGACTACTGAGAAGGAGATCAGCGACGATGAGGAGGACGAACCTAAGAAGGAAGAAGAAGGAGACGTCGAAGAGGTGGACGAGGAGAAGGAGACCAAGTCAAAGAAGAAGAAGATCAAAGAGGTTTCTCACGAATGGCAACTCATCAACAAGCAGAAACCCATCTGGCTGCGCAAGCCTGAAGAGATCACCAAAGATGAGTATGCATCATTCTACAAGAGCTTGACAAACGACTGGGAGGAACACCTTGCAGTGAAACATTTCTCCGTGGAAGGACAGCTCGAGTTCAAAGCAATCCTCTTTGTCCCGAAGAGGGCTCCGTTTGATCTCTTCGACAGCCGTAAAAAACTGAACAACATAAAGCTCTATGTAAGAAGGGTGTTCATCATGGACAACTGTGAGGAGCTGATCCCCGAGTACCTTGGATTCATCAAAGGAGTGGTTGATTCCGACGATCTGCCGCTCAATATCTCACGTGAGATGTTGCAGCAGAACAAGATTCTGAAGGTGATAAGGAAGAATTTGGTGAAGAAGTGCATTGAAATGTTCAATGAAATCGCGGAGAACAAAGAGGACTATAACAAGTTCTATGAGGCCTTTTCTAAGAACTTGAAGTTGGGTATCCACGAAGACAGCCAAAACAGAGCCAAATTGGCTGATTTGCTGCGATTCTACTCCACCAAAAGTGGAGATGAAATGACGAGCCTGAAGGATTACGTCACCAGGATGAAGGAGGGTCAGAAGGACATCTACTACATCACCGGTGAGAGTAAAAAGGCAGTGGAGAATTCCCCCTTCTTGGAACGCCTGAAGAAGAAAGGCTACGAGGTGCTTTTCATGGTCGACGCCATTGATGAGTATGCCGTTGGGCAACTGAAAGAGTACGATGGCAAGAAGCTAGTGTCTGCCACCAAGGAAGGACTTAAACTTGATGATGAAACAGAGGAAGAGAAGAAGAAGAAGGAGGAGAAAAAGAAGTCATTTGAGAACCTTTGCAAGACTATTAAGGACATCCTTGGTGACAAAGTTGAGAAGGTCGTTGTCTCCGACAGGATAGTGGACTCTCCTTGCTGCTTGGTCACCGGCGAATACGGCTGGACGGCAAACATGGAGAGAATCATGAAGGCTCAAGCTCTCAGGGACAACAGCATGGGTGCTTACATGTCAAGCAAGAAGACAATGGAGATCAACCCAGATAATGGAATCATGGAGGAGCTAAGGAAAAGAGCCGAGGCGGACAAAAACGACAAATCCGTCAAGGATTTGGTCATGCTCCTCTTCGAAACTGCTCTATTGACTTCTGGTTTCAGCCTTGATGATCCGAATACATTTGCTGCGAGAATCCACAGAATGTTGAAACTTGGTCTTAGCATCGATGAGGAGGAAAATGAAGGAGGAGATGATGCGGACATGCCTGCTTTGGAGGAAGATGGTGCTGAAGAGAGCAAAATGGAGGAGGTCGACTAA 2115 47.23 MADVQMADAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDKSKLDAQPELFIRIVPDKDNKTLSVIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEQLGRGTKITLFLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEEDEPKKEEEGDVEEVDEEKETKSKKKKIKEVSHEWQLINKQKPIWLRKPEEITKDEYASFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDSRKKLNNIKLYVRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRAKLADLLRFYSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFENLCKTIKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDNSMGAYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLVMLLFETALLTSGFSLDDPNTFAARIHRMLKLGLSIDEEENEGGDDADMPALEEDGAEESKMEEVD 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 480853 483672 - CmoCh16G001050.1 Cmo16g00105 399140

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00105 704 MobiDBLite consensus disorder prediction 677 704 - -
Cmo16g00105 704 CDD HATPase_Hsp90-like 19 207 - -
Cmo16g00105 704 PIRSF HSP90_HTPG 1 704 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cmo16g00105 704 MobiDBLite consensus disorder prediction 220 250 - -
Cmo16g00105 704 Gene3D - 522 673 IPR037196 -
Cmo16g00105 704 Gene3D - 266 434 - -
Cmo16g00105 704 PANTHER HEAT SHOCK PROTEIN 90-1 1 703 - -
Cmo16g00105 704 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 10 218 IPR036890 -
Cmo16g00105 704 PRINTS 90kDa heat shock protein signature 10 30 IPR020575 -
Cmo16g00105 704 PRINTS 90kDa heat shock protein signature 31 53 IPR020575 -
Cmo16g00105 704 PRINTS 90kDa heat shock protein signature 80 97 IPR020575 -
Cmo16g00105 704 PRINTS 90kDa heat shock protein signature 98 115 IPR020575 -
Cmo16g00105 704 PRINTS 90kDa heat shock protein signature 123 145 IPR020575 -
Cmo16g00105 704 PRINTS 90kDa heat shock protein signature 175 192 IPR020575 -
Cmo16g00105 704 PRINTS 90kDa heat shock protein signature 193 211 IPR020575 -
Cmo16g00105 704 MobiDBLite consensus disorder prediction 222 243 - -
Cmo16g00105 704 Gene3D - 7 233 IPR036890 -
Cmo16g00105 704 Gene3D - 435 521 - -
Cmo16g00105 704 Pfam Hsp90 protein 189 692 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cmo16g00105 704 ProSitePatterns Heat shock hsp90 proteins family signature. 30 39 IPR019805 GO:0005524|GO:0006457|GO:0051082
Cmo16g00105 704 SUPERFAMILY Ribosomal protein S5 domain 2-like 267 522 IPR020568 -
Cmo16g00105 704 Coils Coil 232 252 - -
Cmo16g00105 704 Hamap Chaperone protein HtpG [htpG]. 7 669 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cmo16g00105 704 SMART HKATPase_4 32 187 IPR003594 -
Cmo16g00105 704 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 1 703 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cmo16g00105 704 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 186 IPR003594 -
Cmo16g00105 704 Coils Coil 527 547 - -
Cmo16g00105 704 MobiDBLite consensus disorder prediction 675 704 - -
Cmo16g00105 704 SUPERFAMILY HSP90 C-terminal domain 546 668 IPR037196 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00105 K04079 HSP90A, htpG; molecular chaperone HtpG - csv:101210914 1234.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00316 Cmo-Chr5:1403562 Cmo16g00105 Cmo-Chr16:480853 0 dispersed
Cmo11g01241 Cmo-Chr11:7760957 Cmo16g00105 Cmo-Chr16:480853 0 dispersed
Cmo12g00353 Cmo-Chr12:2180257 Cmo16g00105 Cmo-Chr16:480853 0 dispersed
Cmo15g00882 Cmo-Chr15:4464899 Cmo16g00105 Cmo-Chr16:480853 0 dispersed
Cmo16g00105 Cmo-Chr16:480853 Cmo16g01031 Cmo-Chr16:7195032 0 dispersed
Cmo16g00105 Cmo-Chr16:480853 Cmo06g00716 Cmo-Chr6:3650095 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g762 Blo06g01136 Blo15g00109 . . . . . . Cmo16g00105 . . . . . . . Cpe14g00083 . . . . . . . . . . . . . . Cone1ag1191 Cone5ag0892 . . Lsi05g01193 . . . . . . Bda15g00711 . Bpe12g00442 Bma08g00293 . . . . Cma16g00098 . Car16g00088 . . . . . . . . . . . . . . . . . . Csa03g01748 Chy06g00977 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000587 3 3 3 2 4 2 5 5 4 3 3 3 4 4 3 4 3 7 3 3 3 4 5 0 4 3 1 4 4 3 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00105 Cmo_Chr16 FPKM 1.557223 1.739561 0.457922 0.0 1.771049 2.013865 2.536247 0.534858 0.407949 0.52393