Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00112 ATGGCGATCTCCAAACTCCTCTTTCTCCTTCTTCTTTTCCTTCCTTTTCTTTCTGCTGATGTTGTTCCCTCTGACATTTACCTTCTCAGCTGCGGATCATCCTCTAATTCCTCCTTCTTTAATCGCGTCTTCGTTGGCGATTCATTGAAACCCGCCCCCGGCTTTCTCGTCGCCGGTCGATCGGTGGCGGTTTCCAATCGGAATCCACCTCCGGATTCTACCTCTTTGTATCACACAGCTAGAGTTTTCACCAGGGCCTCAAGCTACAAATTCAACCTCAAGAAGAACGGTACTCACTTGCTACGGTTCCATCTTTCGCCATTTTCGGCGCTGGAATTCGATTTACATTCTGCAAATTTCACTATCTCGGCCAATGGATTGTTGCTTTCTAATATTTCTCACGTTAACGATTCTGTAATTAAAGAGTTTATCGTGAGAATTGACGCCAACGTGCTTGAAATCGAGTTCGAACCGGTTTCGGGTTCGGGTTTGGGATTCGTGAATGCAATCGAGGTATTTTCAGCCCCTAAAGAACTCATAACCGATAATGGAGCTAAGCTTGTGGATTCTAATGGAGTTCGAGAATATTACAAACTCACATCGCAAGTCTTGGAAACCAAATACAGAATTAACGTTGGGGGTTCCAAATTGACCCCGTTTAACGACAGTCTTTGGAGAACTTGGGTGCCCGATGAGCCTTATCTGGTTATAAAGTCGGCGGCAAAGCTTGCCTCAACTTTTCAGGCTCCGTACTATCAGGCCGGCGGCGCCACTCGGGAGGATGCGCCGGACATTGTTTACATGACGGCGCAACAGATGAACAAGGACATCGCAGTTTTGGGTGCGAAATTTAACCTCACCTGGAAGTTTCCATTGGATTCTAATGGCATGAAGTACTTGGTTCGCTTGCATTTCTGTGATATTGTTAGCTTTGCTCTTAATCAGTTGTATTTCAATGTGTATATCAATGGCTATCCTGCATATAGGGACCTGGATTTGTCATCTCTTTCCTCTCGGCTATTAACTCCTTTTTATTTTGATTTCATTGTGGATTCTGATGGTTCTGGAAATATTCAAATAAGTGTTGGACCGTCTGATCTGAGCAGTTCTTTGGGATATAATGCGATCTTAAATGGAGCAGAGATCATGGAGATGGTGAGTGCTAGGGGTATGTTTTCAGAAACTGAGAAGAAAAAGAGAAATTCATGGGTCATTGTAGGTCCTATTGTTGGTGGATTCGTTGGTTTATGTCTGGTTTTTGCTGCAATTCTTGCTTTGGTATGCAAGAGGAGAAAGAAACCGACGCTGAGGCGGGCGGAGAGCGCAGGCTGGACTTCGGTTCAGGCATATGCAGGTGGCAGTTCTGATAGTAAATTATCAAGGGGATCAACTCTTGCATCTTTTGGGCCAAATGGATACCACAACTTGAAGATCCCCTTCACTGAAATTCAGTCAGCAACAAACGATTTCGACGAGAGTTTGATCATTGGTTCGGGCGGATTTGGTATGGTTTACAAAGGGGTTCTTAGGGACAATATAAATGTTGCTGTGAAGAGAGGTGTGCCAGGATCAGGGCAGGGCCTTCCTGAATTCCACACTGAGATAGCTATCTTGTCCAAGATTCGACATCACCATCTTGTTTCACTTGTTGGATACTGCGAAGAACAGTCAGAAATGATACTGGTTTATGAATATATAGAGAAAGGTCCATTGAAAAAGCAATTGTATGGCTCGGTCGTGTCGCCTTTGTCGTGGAAACAACGACTCGAAATCTGCATTGGTGCAGCCAGAGGTCTTCACTACCTCCACACTGGGTTTGCACAGGGCATCATCCACCGCGATATCAAGTCGACCAACATTTTACTGGATGAGAGCTTTGTTGCTAAAGTTGCTGATTTTGGTCTTTCAAGATCGGGGCCTCGTCTCGACGAGACACACGTTAGTACGGGAGTAAAAGGTAGCTTTGGCTATCTTGATCCAGAGTATTTTCGAAGACAACAACTCACTGATAAGTCGGATGTGTATTCATTTGGAGTAGTGCTCTATGAAGTTCTTTGTGCTAGGCCTGCTGTTGATCCATTGCTTGATAGGGAACAAGTAAATCTCGCCGAATGGGCGCTGCATTGGCAACGGAAAGGAATGCTCGAAAAGATCATCGATCCTCATTTGGTCGGGAAAATCAATCCGAACCAACAATGGGAGATGTCTTATGGAACTTGGAATATGTTCTTCAACTACAAATCGAGCCACCGATTGAGCCATCAGAACCCGTAG 2274 44.85 MAISKLLFLLLLFLPFLSADVVPSDIYLLSCGSSSNSSFFNRVFVGDSLKPAPGFLVAGRSVAVSNRNPPPDSTSLYHTARVFTRASSYKFNLKKNGTHLLRFHLSPFSALEFDLHSANFTISANGLLLSNISHVNDSVIKEFIVRIDANVLEIEFEPVSGSGLGFVNAIEVFSAPKELITDNGAKLVDSNGVREYYKLTSQVLETKYRINVGGSKLTPFNDSLWRTWVPDEPYLVIKSAAKLASTFQAPYYQAGGATREDAPDIVYMTAQQMNKDIAVLGAKFNLTWKFPLDSNGMKYLVRLHFCDIVSFALNQLYFNVYINGYPAYRDLDLSSLSSRLLTPFYFDFIVDSDGSGNIQISVGPSDLSSSLGYNAILNGAEIMEMVSARGMFSETEKKKRNSWVIVGPIVGGFVGLCLVFAAILALVCKRRKKPTLRRAESAGWTSVQAYAGGSSDSKLSRGSTLASFGPNGYHNLKIPFTEIQSATNDFDESLIIGSGGFGMVYKGVLRDNINVAVKRGVPGSGQGLPEFHTEIAILSKIRHHHLVSLVGYCEEQSEMILVYEYIEKGPLKKQLYGSVVSPLSWKQRLEICIGAARGLHYLHTGFAQGIIHRDIKSTNILLDESFVAKVADFGLSRSGPRLDETHVSTGVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLYEVLCARPAVDPLLDREQVNLAEWALHWQRKGMLEKIIDPHLVGKINPNQQWEMSYGTWNMFFNYKSSHRLSHQNP 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 509021 511355 - CmoCh16G001120.1 Cmo16g00112 399147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00112 757 Pfam Protein tyrosine and serine/threonine kinase 496 686 IPR001245 GO:0004672|GO:0006468
Cmo16g00112 757 PANTHER OS07G0166700 PROTEIN 16 728 IPR045272 GO:0004714|GO:0006468
Cmo16g00112 757 Gene3D - 203 386 - -
Cmo16g00112 757 Gene3D - 25 177 - -
Cmo16g00112 757 Gene3D Transferase(Phosphotransferase) domain 1 566 755 - -
Cmo16g00112 757 ProSitePatterns Protein kinases ATP-binding region signature. 496 518 IPR017441 GO:0005524
Cmo16g00112 757 ProSiteProfiles Protein kinase domain profile. 490 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00112 757 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 16 728 - -
Cmo16g00112 757 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672|GO:0006468
Cmo16g00112 757 Gene3D Phosphorylase Kinase; domain 1 455 565 - -
Cmo16g00112 757 Pfam Malectin-like domain 29 384 IPR024788 -
Cmo16g00112 757 SMART serkin_6 490 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00112 757 SUPERFAMILY Protein kinase-like (PK-like) 473 734 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00112 - - - csv:101211413 1234.55
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo16g00112 Cmo18g01293 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00112 Cmo-Chr16:509021 Cmo20g00478 Cmo-Chr20:2222862 0 dispersed
Cmo16g00112 Cmo-Chr16:509021 Cmo18g01293 Cmo-Chr18:12459276 0 wgd
Cmo16g00112 Cmo-Chr16:509021 Cmo08g00863 Cmo-Chr8:5573165 2.26E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g749 . . . Bda07g01898 Bpe03g00149 . . Bma14g02048 Cmo16g00112 Cmo18g01293 . . . . . . Cpe14g00089 . . . . . . . . . . . . . . . . . . Lsi05g01200 . . . . Blo09g00068 . . . . . . . . . Cma16g00104 Cma18g01264 Car16g00093 Car18g01174 Cpe09g00072 . . . . . . . . Cla05g00907 . . . . . . . Csa03g01740 Chy06g00971 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009011 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 0 0 1 0 1 0 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74944 PF12819 Malectin_like 5.10E-33 CL0202 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00112 Cmo_Chr16 FPKM 18.689022 20.514879 11.696804 11.766542 10.472213 9.2001 10.323994 16.354168 16.03977 17.103516