Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00122 ATGACCTCCAAATTTCCAGTTCCCACATTCCCATTTTCCCCATCTTCTTCATCTTCATCTTCATCTTCCTCGCCCATCTTATACCCCAAAACCGCCAAAATTCGTCTCTCCTTGTGTAATCTCCCTCTGCGTCTCCGGCTTTTCTCTCCATGGAGTGGTTTAAAGCATTTGGGTATTTCAAGCAGAGGAAGGTTTCCCGAGAGGAGGAAGAGAATTCCTAAGGGGAAGGCTGTTTTTGCATCTTTGTTTGGGGTTGGAGCTCCGGAGGCATTGGTTATTGGGGTTGTGGCTCTGTTGGTTTTTGGTCCCAAGGGCCTTGCTGAGGTTGCTCGAACTTTGGGGAAGACCTTACGTACATTTCAACCCACTATAAGAGAACTTCAGGACGTTTCTCGGGAATTCAAGACCACACTTGAGCGAGAAATTGGTCTCGATGAAATCTCGAGTCCAGTCGACAGCTCATACAATTCAAGCAAATCAAATACCTACTCAAACCCACCTTTTGTTCCTAAACCAGAAGAGCCTGTTGCAGTGGCTGAACCAAGAGGCGTCGAAGCACCTGTCGCGGTGGCCTCCCGAACTCCAAAATCTTGA 594 47.81 MTSKFPVPTFPFSPSSSSSSSSSSPILYPKTAKIRLSLCNLPLRLRLFSPWSGLKHLGISSRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQPTIRELQDVSREFKTTLEREIGLDEISSPVDSSYNSSKSNTYSNPPFVPKPEEPVAVAEPRGVEAPVAVASRTPKS 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 544251 547007 - CmoCh16G001220.1 Cmo16g00122 399157

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00122 197 MobiDBLite consensus disorder prediction 1 25 - -
Cmo16g00122 197 PRINTS Bacterial sec-independent translocation TatB protein signature 82 102 - -
Cmo16g00122 197 PRINTS Bacterial sec-independent translocation TatB protein signature 102 121 - -
Cmo16g00122 197 Pfam mttA/Hcf106 family 85 135 IPR003369 GO:0015031
Cmo16g00122 197 MobiDBLite consensus disorder prediction 149 167 - -
Cmo16g00122 197 PANTHER SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA, CHLOROPLASTIC 13 181 - -
Cmo16g00122 197 MobiDBLite consensus disorder prediction 149 197 - -
Cmo16g00122 197 Gene3D - 82 130 - -
Cmo16g00122 197 PANTHER SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATB, CHLOROPLASTIC 13 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00122 - - - cpep:111810081 258.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00122 Cmo-Chr16:544251 Cmo18g01281 Cmo-Chr18:12401839 1.61E-94 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g730 . . . Bda07g01889 . . . Bma14g02059 Cmo16g00122 . . . . . . . Cpe14g00097 Bhi01g01277 . . . . . . . . . . . . . . . . Cone15ag0071 Lsi05g01211 . . Cme06g01020 . Blo09g00078 . . . . . . . . . Cma16g00111 . Car16g00099 . . . . . . . . . . Cla05g00897 Cam05g0981 Cec05g0986 Cco05g0984 Clacu05g0969 Cmu05g0926 Cre05g1010 . Csa03g01732 Chy06g00963 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006454 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00122 Cmo_Chr16 FPKM 0.545984 0.0 42.43689 35.070164 4.151645 4.617016 4.722321 7.585081 9.410798 8.15349