Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00126 ATGCCTTCATGGTGGGGGAAGTCGTCATCCAAAGAAGTGAAGAAGAAAGCGAGCAAGGAAAGTTTCATTGATTCATTACACCGTAAGTTTAAGAATCCACCTGAAGGGAAAGTGAACTGCAGATCAGGAAGTTCTCGTAGACGTGGTGGTGACACTATATCTGAGAAGGGGTCTAAATCACCTCTATCAAGATCACCATCACCTTCCAAAGAAGTATCTAGATGTCAAAGTTTTGCTGAAAGATCACGTTCTCACAAACTTCCACTTCCAGATTTGCACCGTGTGGGTATAAGTCGCACAGATTCTGGCATTGGTGTGACAGCAAAATCTAAATTAGAGAGAAGTTCCAAGACATCTTCATTCCTACCCCTCCCTAGACCTGCATGTATTCGAAGTAGGCCAGGTCCTGCAGATTTGGATGGAGATTTGGTCACTGGTTCAGTCTCTGGTGAGTCCTTGAGTGATAGTGATGATCCCAACGATTCACGACAACGTAGTCCTCGGGCAACAGACATTGACATTGGGGCTAGAACTGTGATAGCTTCTACTGAACCTAGTGCAACTGTCAAAGATCAGTCTCCTACTGTCGTGCAAATACATTTAAAAGAGGGAAAGAAAGCGGAAAATGTTCCATTTCCTCACAAAAGTGCTTCAATACCCAAACGGAGGCCTTTAAGCAGCAAAGTAACAAATCTACAAGTTCCTCGCCATGGGGCCTTCTTTAGTGCTCCTGATAGTTCTATGTCTAGTCCCTCCAGAAGTCCTATGAGGGTATTTGGCACTGAGCAAGTCGTGAACGCTGCTGTTTGGGCTGGAAAATCTCACCCAGATGTCGTTTTAGGTGGATCTGGCCATTGTTCTAGTCCTGGTTCTGGTCACAATTCAGGGCACAACTCTATGGGAGGTGATATGACGGGCCACTTCTTTTGGCAACAAAGTAGGGGTAGCCCTGAATATTCTCCAGTACCTAGTTCTAGAATGACTAGCCCCGGCCCTAGTTCCAGAATTCAAAGTGGTGCTGTCACGCCTATTCATCCTAGAGCAGGAGCTCTACCTGCTGAGTCACAAACATGCTGGCCTGATGAGAAACAAACTCATCGTTTGCCTCTTCCTCCCATAGCAATCTCAAACTCTTCACCGTTTTCGCATTCAAATTCTGCAGTCACATCTCCTACAGTTCCTAGGAGTCCAGGAAGGACAGAGAATCCAGCAAGCCCAGGTTCACGCTGGAAAAAGGGGAAGCTACTGGGTAGGGGAACATTTGGGCACGTATATGTTGGTTTTAATAGCGAAAGTGGAGAAATGTGTGCAATGAAGGAGGTCACGTTATTTTCTGATGATGCAAAGTCTAAGGAAAGTGCTAAACAATTAATGCAGGAAATTGCTCTACTGAGTCGTTTGCGGCATCCCAACATCGTGCAGTATTATGGTTCGGAAACAGTGGGTGACAAATTCTATATATATCTGGAATATGTATCTGGTGGTTCCATTTATAAATTACTACAAGAATATGGACAATTTGGGGAACTAGCAATTCGTAGCTATACTCAACAACTGCTATCAGGACTTGCATATTTGCATGCTAAAACTACAGTGCACAGGGATATTAAAGGAGCAAACATACTTGTTGACCCAAATGGACGTGTTAAATTGGCAGACTTTGGGATGGCAAAGCATATCACAGGCCAATCGTGTCCACTATCATTGAAGGGCAGCCCTTACTGGATGGCACCTGAGGTCATAAAGAACTCAAATGGTTGCAACCTTGCTGTTGATATTTGGAGTCTTGGATGTACCGTTCTGGAGATGGCTACTACGAAGCCACCCTGGAGCCAGTATGAAGGGGTTGCTGCGATGTTTAAGATTGGTAATAGCAAAGAACTCCCGGTAATTCCAGAGCACCTCTCAGATGATGGGAAGGATTTTGTGAGACTGTGTCTGCAACGAAACCCGCTTCATCGACCTACAGCTGCTCAACTCTTGGAGCATCCCTTTGTCAAATATGCTGCGCCTGTAGAGAGGCCTATTTTGAGCTCTGAACCTTCTGATGCAACTCCTGGGGTTACAAACGGAGTGAAGATTTTGGGTATTGGTCAATCACGGACTACTTCTGTGGACTCTGATAGTAGACTTGCAGTTCATTCTTCAAGAGTCTCAAAAGCTGTTCTTCATGCCAGTGAAATCAATATTCCCAGAAACATATCATGCCCTGTTTCGCCAATTGGAAGCCCTCTTTTGCACTCGCGATCACCTCATACCAGTGGAAGAATGTCTCCTTCACCCATATCAAGTCCACGAACCACTTCGGGCTCATCCACACCTTTGACAGGATGTGGTGGTGCAATTCCTTACAACCACCTGAAACAAGCTATATACTTGCAAGATGGATTTGGAAGCAAGCCAAAGTCCTTAAATAGCACTCCGTACAGCAGCTGTATATCCTTCCATGATTCAAATCCCGATATTTTTCGAGGGTTGCAGCCTGGGGCTCACATATTCTCTGAAATGATACCAGAAAATGATATCTTGGGAAAGCAGGTCGGACGGCCTGCTTATAGTGAATTGTATGATGGACAGCAGGTCTTGGCTGACCGAGTGTCTCGACAGCTCCTGAGGGATCATGTTAAAACAAACCCCTCTCTTGATTTGAGTCCTACCCCCTCAACGTCTAGCCGCATGAATGGTATCTGA 2691 45.34 MPSWWGKSSSKEVKKKASKESFIDSLHRKFKNPPEGKVNCRSGSSRRRGGDTISEKGSKSPLSRSPSPSKEVSRCQSFAERSRSHKLPLPDLHRVGISRTDSGIGVTAKSKLERSSKTSSFLPLPRPACIRSRPGPADLDGDLVTGSVSGESLSDSDDPNDSRQRSPRATDIDIGARTVIASTEPSATVKDQSPTVVQIHLKEGKKAENVPFPHKSASIPKRRPLSSKVTNLQVPRHGAFFSAPDSSMSSPSRSPMRVFGTEQVVNAAVWAGKSHPDVVLGGSGHCSSPGSGHNSGHNSMGGDMTGHFFWQQSRGSPEYSPVPSSRMTSPGPSSRIQSGAVTPIHPRAGALPAESQTCWPDEKQTHRLPLPPIAISNSSPFSHSNSAVTSPTVPRSPGRTENPASPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEIALLSRLRHPNIVQYYGSETVGDKFYIYLEYVSGGSIYKLLQEYGQFGELAIRSYTQQLLSGLAYLHAKTTVHRDIKGANILVDPNGRVKLADFGMAKHITGQSCPLSLKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPVIPEHLSDDGKDFVRLCLQRNPLHRPTAAQLLEHPFVKYAAPVERPILSSEPSDATPGVTNGVKILGIGQSRTTSVDSDSRLAVHSSRVSKAVLHASEINIPRNISCPVSPIGSPLLHSRSPHTSGRMSPSPISSPRTTSGSSTPLTGCGGAIPYNHLKQAIYLQDGFGSKPKSLNSTPYSSCISFHDSNPDIFRGLQPGAHIFSEMIPENDILGKQVGRPAYSELYDGQQVLADRVSRQLLRDHVKTNPSLDLSPTPSTSSRMNGI 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 566206 572925 + CmoCh16G001260.1 Cmo16g00126 399161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00126 896 MobiDBLite consensus disorder prediction 371 403 - -
Cmo16g00126 896 MobiDBLite consensus disorder prediction 103 122 - -
Cmo16g00126 896 MobiDBLite consensus disorder prediction 16 176 - -
Cmo16g00126 896 MobiDBLite consensus disorder prediction 873 896 - -
Cmo16g00126 896 CDD STKc_MEKK1_plant 409 666 - -
Cmo16g00126 896 MobiDBLite consensus disorder prediction 363 412 - -
Cmo16g00126 896 ProSitePatterns Protein kinases ATP-binding region signature. 416 439 IPR017441 GO:0005524
Cmo16g00126 896 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 813 - -
Cmo16g00126 896 MobiDBLite consensus disorder prediction 745 777 - -
Cmo16g00126 896 MobiDBLite consensus disorder prediction 285 340 - -
Cmo16g00126 896 MobiDBLite consensus disorder prediction 287 340 - -
Cmo16g00126 896 Gene3D Transferase(Phosphotransferase) domain 1 408 684 - -
Cmo16g00126 896 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 813 - -
Cmo16g00126 896 MobiDBLite consensus disorder prediction 76 92 - -
Cmo16g00126 896 MobiDBLite consensus disorder prediction 16 54 - -
Cmo16g00126 896 MobiDBLite consensus disorder prediction 56 75 - -
Cmo16g00126 896 MobiDBLite consensus disorder prediction 746 777 - -
Cmo16g00126 896 ProSiteProfiles Protein kinase domain profile. 410 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00126 896 SUPERFAMILY Protein kinase-like (PK-like) 408 751 IPR011009 -
Cmo16g00126 896 SMART serkin_6 410 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00126 896 MobiDBLite consensus disorder prediction 879 896 - -
Cmo16g00126 896 MobiDBLite consensus disorder prediction 156 170 - -
Cmo16g00126 896 Pfam Protein kinase domain 411 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo16g00126 Cmo18g01283 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00205 Cmo-Chr5:895707 Cmo16g00126 Cmo-Chr16:566206 5.17E-109 dispersed
Cmo12g00455 Cmo-Chr12:2785245 Cmo16g00126 Cmo-Chr16:566206 1.48E-97 dispersed
Cmo16g00126 Cmo-Chr16:566206 Cmo18g01283 Cmo-Chr18:12410799 0 wgd
Cmo16g00126 Cmo-Chr16:566206 Cmo02g01089 Cmo-Chr2:6606331 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74945 PF00069 Pkinase 2.30E-69 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00126 K20717 - csv:101214961 1528.07