Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00130 ATGAATCTGGCCGCCGTCGAAGCTCCATTACTAGTTCTTTTACTTCTTGCTGCAGCGCTGCGGTGGCCGCTCGCCGGAGCGCGGCTCCTAGTGGAGATGACGGTGGTCCAAAACGCCTCTTCCATCGGCGCCTTCTGTTTAGACGGAAGCTTGCCGGCGTATCACCTGGACAGAGGATTCGGCGCCGGCGCGGGAAACTGGCTTCTACAGTTCGAGGGTGGTGGGTGGTGCAACGATGTAAAGTCTTGTTTGGAGAGAGCGAATAGCCGAAGAGGATCAACGCGTTTGATGAACAAATGGGAAGACTTCTCTGGCATCCTCTCCAACAACGCCTCCCTTAACCCAGATTTTTATAATTGGAACCGTGTGAAACTCAGGTACTGTGATGGAGCCTCGTTTGGAGGAAATGCCTTGTTTGACAATGGGACATCGCTGCTTTATTTCAAAGGGCAAAAGATATGGGAATCCATCATTCTCGATCTTCTACCAAAAGGGTTGGGGACAGCAAGGAAGGCTCTGCTCTCTGGTTGCTCTGCTGGAGGTCTAGCAACTTTTCTGCATTGTGAGAATTTCTCCAAGTATTTGCCAAGGAATGCCAGTGTCAAATGCTTGAGTGATGCTGGATTTTTTCTTGACTTAAGGGATACAGGTTTAAATCACACCATGAGGAACTTCTATAGGGATCTTGTGGCTCTGCAGGGGATGCAGCAAAATCTGAATGAAGACTGCACAGCCGCCTCTTACTTTCCAGAATTGTGTATATTCCCTCAATATTCCTTGAAGTACATAACAACACCATTTTTCGTTCTGAATTCAGCCTATGATGTTTTCCAATTCCATCACGGATTGGTGCCACCATCTGCTGATTTACGTGGGCATTGGAACCACTGCAAACTCAATCCAGCAGAATGTAGTGAACAACAGATTCAGGTACTGCAAGGTCTAAGAATCAGCATGCTTTCTGCATTAAGATTATTCTATGAATATTCAAGCAGAGGAGGAATGTTCATAAATTCATGCTTTGCTCACTGCCAAAGTGAGTCACAAGACACATGGTTTGGAGAGGACTCCCCAACAATAGATGACAAGACAATAGCAGAAGCAGTTGGAGATTGGTACTTTGGCAGGAGGAACACAAAGGAGATTGACTGTGCTTATCCATGCGACTCAACTTGCCATAATATTATACCATGA 1194 46.48 MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQNASSIGAFCLDGSLPAYHLDRGFGAGAGNWLLQFEGGGWCNDVKSCLERANSRRGSTRLMNKWEDFSGILSNNASLNPDFYNWNRVKLRYCDGASFGGNALFDNGTSLLYFKGQKIWESIILDLLPKGLGTARKALLSGCSAGGLATFLHCENFSKYLPRNASVKCLSDAGFFLDLRDTGLNHTMRNFYRDLVALQGMQQNLNEDCTAASYFPELCIFPQYSLKYITTPFFVLNSAYDVFQFHHGLVPPSADLRGHWNHCKLNPAECSEQQIQVLQGLRISMLSALRLFYEYSSRGGMFINSCFAHCQSESQDTWFGEDSPTIDDKTIAEAVGDWYFGRRNTKEIDCAYPCDSTCHNIIP 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 605501 609441 + CmoCh16G001300.1 Cmo16g00130 399165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00130 397 PANTHER NOTUM-RELATED 27 397 IPR004963 GO:0016787
Cmo16g00130 397 Pfam Pectinacetylesterase 28 377 IPR004963 GO:0016787
Cmo16g00130 397 PANTHER PECTIN ACETYLESTERASE 9 27 397 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo16g00130 Cmo18g01274 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00635 Cmo-Chr4:3142756 Cmo16g00130 Cmo-Chr16:605501 1.20E-131 dispersed
Cmo11g01255 Cmo-Chr11:7951868 Cmo16g00130 Cmo-Chr16:605501 4.15E-144 dispersed
Cmo16g00130 Cmo-Chr16:605501 Cmo16g00560 Cmo-Chr16:2729529 1.34E-114 dispersed
Cmo07g01038 Cmo-Chr7:5244827 Cmo16g00130 Cmo-Chr16:605501 3.59E-127 transposed
Cmo16g00130 Cmo-Chr16:605501 Cmo18g01274 Cmo-Chr18:12377830 5.86E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00130 K19882 - csv:101216160 741.11