Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00131 ATGCTCTTTTCAAGCTTTCCCAATATGGATTCTTCAAAATTGGGCTTCACCCATCTTCCAATCCTTGCCCTTCTCATCGCTCTCTCCTTCCAAACATCACTAGGAAGCAGCAGCATGATAAAGTGCGAGGCTTTGGAGAAAAGCAGGTGCGCATTTGCAGTGTCGTGGTCGGGAAAGCGGTGCGTGCTTGAAAAGACAGTGAAGCGCAGTGGAGAAGAAGCGTTCACATGTCGGACGTCGGAGATCGAGGCCGACCAATTACAGAACATCGTTGAAACAGAGCAGTGCATCGAAGGTTGTGGCCTCGACAGGAACACCCTTGGTATCTCCTCTGACTCCCTTCTCGACACGCGCTTCACTCGCGACCTCTGTTCCTCTCGCTGCTACAATCATTGCTCCAATGTTGTCGACCTCTTCTTCAACCTCGCCGCCGGTGAAGGCGTTTTTCTTCCGAAGCTTTGTGAAGCTCAAGGAGGAAATGTGAGAAGAGGAATGTCGGAGATTAGAAGCTCTGGGATTGTGGCGCCGGGACCCGTTCAGCCAGTGTCTCTGTCAACTGCGCCAGGGCCAGGTCGGGCCATGTCTCTGTCGGTTGCTCCAGCAGTCGCGCCGGCCGTGAAGATGGTGAGCCAAAGGCAAAGACTTGCCCGGAAAAAGTACAGAGAAGAACACCCGGAACTGTTTCCGGAAGTAGAGCCAACGCCACCTAAAGACCCCGACAAGAAGAAGAAGAAGAGTAAATTCAAGCGCAAGAAGGCAGAATCGAACTCAACCAGAGACCCAAATAAACCCCACAAGAAGGGTTTTAAGAAACACCCTCTTAGAGTGCCTGGGATGAAACCCGGAGAAAGCTGCTTCATCTGCAAGGCCAAAGACCACATTGCTAAGCTTTGCCCCGAAAAGGCTCAATGGGAGAAGAACAAGATATGCTTGCTTTGTCGGAGACGAGGGCACAGCCTCAAAAATTGCCCAGACAAAAATGAAAGGACTGTGGATAAGAAGTTATGCTATAACTGTGGTGAAACAGGACATTCACTGGCTAATTGTCCGCAGCCTCTTCAAGATGGAGGAACCAAATTCGCCAGTTGCTTTATTTGTAATGAAAGTGGACACTTAAGCAAAAACTGTCCGAAGAACACTCATGGGATCTACCCTAAGGGAGGTTGTTGTAAAACTTGTGGGGAAGTCACACATTTAGCTAAGGATTGTCCAAACAAAGCCACCCAATTTTCTGCTGGGGCTTATGATGGTAACAGATCATCTGGATATGTGGAAATGCATAGACGACCAGAGACGAGGCGTGTGAGCGGTGATGATCTCGAGGATGATTTCAACATCGATGAAGATCATTTGCAGATGAAGGATGCAAAAGTGGAAAAGAAAAAGGGTCCCAAAGTTGTGAATTTCTTGCATGTTCATCCCCATTCTTATTGCGTTAAATTACAATGTTGGATAAAAGTTGGAACTGTCACGTTGTTGTTTCAGGTCACAGTCACTTGTAATGTTGCGAACGCCGCATCTGGAATGGCTGTGAGTGATGAATGTAAGCTCAAATTTTTGGAATTGAAAACGAAGAGGAACTATCGATTCATTGTATTCAAGATTGAGAATCAAGAAGTTGTTGTGGATAAGCTCGGGAGTCCTCAAAAAACTTATGATGATTTCCTTGCTGCCATTCCTTCTGATGAATGTCGCTATGCTGTCTTTGACTTTGATTTCACCACTGACGAGAACTGCCAGAAAAGCAAGATTTTCTTCATAGCTTGGTCCCCCGACACATCGATAGTGAGAAATAAGATGGTTTATGCGAGCTCCAAGGACAGATTCAAGAGGGAATTGGATGGAATTCAGGTGGAACTGCAAGCCACAGATCCCAGCGAAATGAGCTTCGACATTATCAAAGCTCGAGCCTTTTAA 1917 46.9 MLFSSFPNMDSSKLGFTHLPILALLIALSFQTSLGSSSMIKCEALEKSRCAFAVSWSGKRCVLEKTVKRSGEEAFTCRTSEIEADQLQNIVETEQCIEGCGLDRNTLGISSDSLLDTRFTRDLCSSRCYNHCSNVVDLFFNLAAGEGVFLPKLCEAQGGNVRRGMSEIRSSGIVAPGPVQPVSLSTAPGPGRAMSLSVAPAVAPAVKMVSQRQRLARKKYREEHPELFPEVEPTPPKDPDKKKKKSKFKRKKAESNSTRDPNKPHKKGFKKHPLRVPGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKNERTVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPNKATQFSAGAYDGNRSSGYVEMHRRPETRRVSGDDLEDDFNIDEDHLQMKDAKVEKKKGPKVVNFLHVHPHSYCVKLQCWIKVGTVTLLFQVTVTCNVANAASGMAVSDECKLKFLELKTKRNYRFIVFKIENQEVVVDKLGSPQKTYDDFLAAIPSDECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSIVRNKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 612380 617437 + CmoCh16G001310.1 Cmo16g00131 399166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00131 638 Gene3D - 331 358 - -
Cmo16g00131 638 MobiDBLite consensus disorder prediction 214 275 - -
Cmo16g00131 638 SUPERFAMILY Actin depolymerizing proteins 504 636 - -
Cmo16g00131 638 Gene3D Severin 497 637 IPR029006 -
Cmo16g00131 638 ProSiteProfiles Zinc finger CCHC-type profile. 336 351 IPR001878 GO:0003676|GO:0008270
Cmo16g00131 638 SUPERFAMILY Retrovirus zinc finger-like domains 329 380 IPR036875 GO:0003676|GO:0008270
Cmo16g00131 638 MobiDBLite consensus disorder prediction 215 241 - -
Cmo16g00131 638 Gene3D - 359 416 - -
Cmo16g00131 638 Gene3D - 278 330 - -
Cmo16g00131 638 Pfam Cofilin/tropomyosin-type actin-binding protein 515 635 IPR002108 GO:0003779
Cmo16g00131 638 Pfam PAR1 protein 40 204 IPR009489 -
Cmo16g00131 638 SMART adf_2 513 638 IPR002108 GO:0003779
Cmo16g00131 638 PANTHER OS04G0555800 PROTEIN 208 470 - -
Cmo16g00131 638 SUPERFAMILY Retrovirus zinc finger-like domains 278 326 IPR036875 GO:0003676|GO:0008270
Cmo16g00131 638 ProSiteProfiles ADF-H domain profile. 508 638 IPR002108 GO:0003779
Cmo16g00131 638 SMART c2hcfinal6 335 351 IPR001878 GO:0003676|GO:0008270
Cmo16g00131 638 SMART c2hcfinal6 309 325 IPR001878 GO:0003676|GO:0008270
Cmo16g00131 638 SMART c2hcfinal6 284 300 IPR001878 GO:0003676|GO:0008270
Cmo16g00131 638 SMART c2hcfinal6 362 378 IPR001878 GO:0003676|GO:0008270
Cmo16g00131 638 SMART c2hcfinal6 389 405 IPR001878 GO:0003676|GO:0008270
Cmo16g00131 638 ProSiteProfiles Zinc finger CCHC-type profile. 363 378 IPR001878 GO:0003676|GO:0008270
Cmo16g00131 638 ProSiteProfiles Zinc finger CCHC-type profile. 390 405 IPR001878 GO:0003676|GO:0008270
Cmo16g00131 638 CDD ADF_cofilin_like 507 637 IPR017904 GO:0015629|GO:0030042
Cmo16g00131 638 Pfam Zinc knuckle 363 378 IPR001878 GO:0003676|GO:0008270
Cmo16g00131 638 Pfam Zinc knuckle 335 351 IPR001878 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00131 - - - cpep:111810346 772.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00260 Cmo-Chr6:1327361 Cmo16g00131 Cmo-Chr16:612380 8.90E-45 dispersed
Cmo06g01082 Cmo-Chr6:8354944 Cmo16g00131 Cmo-Chr16:612380 1.24E-63 dispersed
Cmo10g00364 Cmo-Chr10:1651572 Cmo16g00131 Cmo-Chr16:612380 5.21E-10 dispersed
Cmo14g00094 Cmo-Chr14:446166 Cmo16g00131 Cmo-Chr16:612380 2.04E-47 dispersed
Cmo16g00131 Cmo-Chr16:612380 Cmo03g00452 Cmo-Chr3:5058216 6.01E-71 dispersed
Cmo19g00702 Cmo-Chr19:7410137 Cmo16g00131 Cmo-Chr16:612380 2.20E-07 dispersed
Cmo14g02092 Cmo-Chr14:15187052 Cmo16g00131 Cmo-Chr16:612380 2.50E-72 wgd
Cmo15g01156 Cmo-Chr15:8081976 Cmo16g00131 Cmo-Chr16:612380 3.43E-79 wgd
Cmo16g00131 Cmo-Chr16:612380 Cmo18g01271 Cmo-Chr18:12357550 5.65E-41 wgd
Cmo16g00131 Cmo-Chr16:612380 Cmo02g01086 Cmo-Chr2:6595091 1.09E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g691 . Blo15g00168 . . . Bpe07g00937 . . Cmo16g00131 . . . . . . . Cpe14g00106 . . . . . . . . . . . . . . . . . . Lsi05g01222 . . . . . Bda06g00684 . . . . . . . . Cma16g00122 . Car16g00112 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003494 2 2 2 3 2 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 2 1 1 1 1 2 1 3 1 3 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00131 Cmo_Chr16 FPKM 4.680212 5.117897 3.365185 3.814535 13.626295 14.114905 15.209227 6.408393 7.189719 6.324899