Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00135 ATGTTGGAGAGCGGGCGGCCAAAGGCGGGTTTCCGGCTGGTGATAATCGACGGTAGGGCTTACGTGGAGAAATTTATGGATGCGTATCAAAGTAGGGATAAGTTTACGCTGTGGGGGATCCTACAGTTGTTACGGTTGTACCCTGGTAAAATTCCCGATTTAGACCTCATGTTCAATTGCGAGGACCGGCCCAACATTTTCATTGGTGACTATAGTGGGCCCGGGCCCAATTCGACGGCCCCACCTCCTGTGTTCCGATACTGTGGAGATGATGACACGTTGGACATTGTCTTTCCTGATTGGTCCTTCTGGGGATGGCCTGAGATAAATATAAAGCCATGGGTACCCCTGATGGAAGATCTAAAGCAAGGCAACAAAAGGACAAAATGGTCAAATAGAGAAGCTCATGCTTATTGGAAGGGGAATATTAAAGTTTCTATGGTTCGATATAAACTTCTGGGATGCAATCTCTCTCGTGAGCACGATTGGAAGGCTCGTGTGTTCATGCAGGATTGGGATAAAGAACAAGAACAACGATTCAAAAACTCCAATCTAGCTGATCAATGTGTTCATAGGTATAAAATATACGTGGAGGGGGTTGGTTGGTCGGTGAGTCTTAAATACATTCTTGCTTGTGATTCGGTGACATTGATGGTAAATCCCTATTACTATGATTTCTTCACTAGAAGTTTAGTGCCAATGCATCACTATTGGCCAATCAAAGATGACGACGACATGTGCAACTCTATCAAGTTCGCCGTCGATTGGGGCAATACCCACCAACAAAAGGTACGGGCAATTGGGAAGGCAGCGAGCAAGTTTACCGAGGAGCAGCTAAGGATGGAGAAGGTGTATGACTACATGTTTCACAGTCTAAATGAATACTCCAAACTCTTAACCTTCAAGCCAACCATCCCACCAAATGCTACTGAACTCTGCTTGGAGGAATTGGCTTGCCCTGCCCAAGACTTAGCCACCAAGTTTATGATCGATACTCTCGTAAAACAAAACGAAAAAGCGCGCCAAAGCGGTGGCCACCGTGTCTGTGTAAATGCGTCTGTGTGCGTGAGAACTGAGACGAAATTTTGGAGTGCAAATTTCATGGGGAAACAGAAGCAACAAGTGATTTCTCGATTCTTTGCTCCGAAACCCAAGTCCCCATCTGTTTCTTCTTCTTCCTCCTCCGCCTTAGCTCCGCCGACCCAATCGTTTTCACCGCCGAAGATATCAGCAACAGTCACTTTCTCCCCTTCCAAGCGTCTCATTTCTTCTGCACTCGCTTCTCAGTTAACGCCACCCAAATCCTCTAAACGCCCGAAACTCTCTCCTCATACCCATAACCCTCTGCCTTCCGTCTCCAATCCCTCGCTTCACAAAAGATTCCTCGAGAAGTTCCTTGAACCCATTGAAAACTCCTTTGAATCTTCTAATCAAAACCCCAAAGCCCCAACGGGCGGTGATGCCAAATACACCCCTTTGGAGCTACAAGTTGTGGACCTTAAGAAGAGGTACCCTGATGTTCTTCTCATGGTGGAGGTTGGTTACAGGTACAGATTTTTTGGCCAAGATGCTGAAATAGCAGCTCGTGTTTTGGGTATTTATGCCCATTTGGATCGTAATTTTATGACTGCGAGTATACCCACGTTTAGATTGAATGTGCATGTGAGGAGGCTGGTTAGTGCAGGATATAAGGTGGGTGTTGTCAAGCAAACTGAAACCGCTGCGATTAAGGCTCATGGGTCGAATAAGTTAGGCCCCTTTTGCAGGGGACTATCGGCTTTGTACACTAAAGCAACATTGGAGGCAATCCAGAATTTAGGGGGAGCTGAGGAGGGATGTGGGGGAGAGAGTAATTACTTGTTCTGTGTAGTTGAAAAGAGCATGTTGGTGGATAATTTGGACCGTAGAATCGAATATGGGGTTGATGTGAAAATTGGGATGGTTGCCATGGAGATATCAACTGGGGATGTTATTTATAGGGAATATGATGATAACTTCATGAGAAGTGGGCTTGAGGCAATGCTCTTGAGCTTGTCTCCTGCAGAGCTTCTTCTTGGGGATCCCATATCAAAGGCAACAGAGAAGGTGTTCGATCGAGTAGGAAGCCTTTCGTTTACTGTAGCATTGAATGCTGTTGCGTGCTGTACCGATTGTGTAGTTTGTTATGCTGGACCTGCTTCAAATGTCCGTGTGGAGCATGTTTCACGAGATTGCTTTAAAGATGGCAGTGCACTTGCTGAAGTGATGTCTTTGTATGAAAACATTGACAAAGACAACTTAGCAGCTGATCATCACGACCCTGATACAGTGTTGGCTGAACGAAAAAGTGATCGCATAGCAATTAAGGTTTTGAAGAATAACGATGACGGTTCTGAAACTGGCTCTCTATTACAGTGCATGAATCACACTCTTACAATATTCGGTTCGAGGCTTCTTCGCCAATGGATAACACATCCTTTATGTGAAAGAGACATGATAATTGCTCGTCAAGAGGCCGTTTCTGAGATTGCTGCAGCTATGGTATCTTCAAAAGTAACTCAAAATATCAGAGAGTCAGATGAAGAAGATTCTGATGTAATGGTCATTGAACCAGAATTGAATTATATACTTTCTTCAGTGTTAACAACCTTGGGAAGGGCACCAGATATTCAGCGTGGAATAACACGAATCTTTCACCGAACTGCAGCCCCGTCAGAGTTCATTGCAGTTATTCAAGCTATTTTATATGCGGGAAAACAGCTTCAGCAGTTTCACATTGATGAAGAGGATGACAATTATTCCAGTGAAAGTATGATTGGCTCCAAGCTCCTAAGAAAGCTGATTTTATCTGCTTCCTCCTCTGGTTTGATTAGCATTGCTGCAAAACTTTTGTCAACGATCAGCAAAGAAGCTGCAGATCAAGGGGACCTTCCTAACCTGATGATCATCAATAATGACCAATTTCCGAAGGTTGCTAGAGCTCGGAAGGAGGCTCAATCTGCAAGAGAGAAATTGGATTCTCTGATCACCGTATACCGTAAGCAGCTTGGAATGCGGAAGTTGGAGTTCATTAGTGTGTCTGGAACTACGCATTTGATTGAGTTGGCCTTAGATGTAAAGGTACCCTCTAATTGGGTGAAGATCAATAGTACAAAGAAAACTATAAGATATCACCCACCGGAAGTACTGGCTGCCTTAGACGAGCTATCATTGGCAAATGAGGAGCTCATGGTAGCATCTCGGGATGCTTGGGATGGCTTTCTAAGTGGATTCAGCAGATATTATGCAGAGTTTCAATCTGCTGTTCAAGCACTGGCTTCCATTGACTGTCTGTATTCGTTAGCTATTCTCTCAAGACATAAGAACTATGTTCGTCCAGAGTTTGTACATGTTGATGAACCTGCTCAGATAGTTATATGTTCTGGACGCCATCCGGTTTTGGAGAGTACATTACAAGGCAATTTCGTCCCAAATGACACGAATTTGGACGTGAATGGAGAGCATTGTCAAATTGTAACAGGACCAAACATGGGAGGGAAAAGTTGCTACATTCGACAAGTTGCTCTCATTGCTCTAATGGCTCAGGTCGGTTCCTATGTACCAGCATTCTCCGCGAAGCTTCACGTCCTGGACGGTATATACACTCGAATGGGTGCTTCTGACAGTATCCAACAAGGTAGAAGCACCTTCTTAGAAGAAATGACTGAGACTTCACATATACTCCATCATTCCACATCACGTTCCTTGGTCATAATTGACGAGCTTGGGAGAGGAACAAGCACCCACGATGGCGTGGCCATTGCATATGCAGCTTTGCATAATCTTCTCCACCACAAGAAATGTTTGGTCCTCTTCGTTACCCATTATCCTAAAGTTGCTGATATTACAAAGGAATTCCCAGCATCTGCAGGGGTATACCATGTCTCATATCTGACTTCACACGAAACGCCAAGCTTCTCAGGCCCAAAATCCGCTCAGGATGTGATTTACCTATATAAGCTCGTTCCTGGAATTGCGGAGAGCAGTTTTGGTTTCAAGGTTGCCCAACTTGCACAGATACCTTTATCATGTATTGCACGAGCCACAGAAATGGGGGTATGGTTAGAAGAAATAGTAACCAGAAGAGCACAACGCAAAACCAGAGAAATACATTTACAAGAAGCATCAGGCAAGGGATTGGAATTGGAAAGCTCCGAGTGCTTCCTTGAAGATAGAATTGATGCTTACGAGGAATTCTTTCTGTTCTTGAAAGCTACAATATGTTCTCCTGATGATATGGGGAAACGTTTCCTTCAATTTTCCCAAGCTAGAAGCATGGCCATGGACTTGTTAGGAAGAATTTTCCCTTCTTCGCAAAAGACAGCCCCCTCAGATGCAAATCTTTGTAGGACAGCACTACTATCTCCTACTGCTTTACAAAGGGCACAATATGAGTACATTATTTTGAAATCTAAACCAACTGAATAG 4446 44.26 MLESGRPKAGFRLVIIDGRAYVEKFMDAYQSRDKFTLWGILQLLRLYPGKIPDLDLMFNCEDRPNIFIGDYSGPGPNSTAPPPVFRYCGDDDTLDIVFPDWSFWGWPEINIKPWVPLMEDLKQGNKRTKWSNREAHAYWKGNIKVSMVRYKLLGCNLSREHDWKARVFMQDWDKEQEQRFKNSNLADQCVHRYKIYVEGVGWSVSLKYILACDSVTLMVNPYYYDFFTRSLVPMHHYWPIKDDDDMCNSIKFAVDWGNTHQQKVRAIGKAASKFTEEQLRMEKVYDYMFHSLNEYSKLLTFKPTIPPNATELCLEELACPAQDLATKFMIDTLVKQNEKARQSGGHRVCVNASVCVRTETKFWSANFMGKQKQQVISRFFAPKPKSPSVSSSSSSALAPPTQSFSPPKISATVTFSPSKRLISSALASQLTPPKSSKRPKLSPHTHNPLPSVSNPSLHKRFLEKFLEPIENSFESSNQNPKAPTGGDAKYTPLELQVVDLKKRYPDVLLMVEVGYRYRFFGQDAEIAARVLGIYAHLDRNFMTASIPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHGSNKLGPFCRGLSALYTKATLEAIQNLGGAEEGCGGESNYLFCVVEKSMLVDNLDRRIEYGVDVKIGMVAMEISTGDVIYREYDDNFMRSGLEAMLLSLSPAELLLGDPISKATEKVFDRVGSLSFTVALNAVACCTDCVVCYAGPASNVRVEHVSRDCFKDGSALAEVMSLYENIDKDNLAADHHDPDTVLAERKSDRIAIKVLKNNDDGSETGSLLQCMNHTLTIFGSRLLRQWITHPLCERDMIIARQEAVSEIAAAMVSSKVTQNIRESDEEDSDVMVIEPELNYILSSVLTTLGRAPDIQRGITRIFHRTAAPSEFIAVIQAILYAGKQLQQFHIDEEDDNYSSESMIGSKLLRKLILSASSSGLISIAAKLLSTISKEAADQGDLPNLMIINNDQFPKVARARKEAQSAREKLDSLITVYRKQLGMRKLEFISVSGTTHLIELALDVKVPSNWVKINSTKKTIRYHPPEVLAALDELSLANEELMVASRDAWDGFLSGFSRYYAEFQSAVQALASIDCLYSLAILSRHKNYVRPEFVHVDEPAQIVICSGRHPVLESTLQGNFVPNDTNLDVNGEHCQIVTGPNMGGKSCYIRQVALIALMAQVGSYVPAFSAKLHVLDGIYTRMGASDSIQQGRSTFLEEMTETSHILHHSTSRSLVIIDELGRGTSTHDGVAIAYAALHNLLHHKKCLVLFVTHYPKVADITKEFPASAGVYHVSYLTSHETPSFSGPKSAQDVIYLYKLVPGIAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKTREIHLQEASGKGLELESSECFLEDRIDAYEEFFLFLKATICSPDDMGKRFLQFSQARSMAMDLLGRIFPSSQKTAPSDANLCRTALLSPTALQRAQYEYIILKSKPTE 1481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 625008 633574 + CmoCh16G001350.1 Cmo16g00135 399170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00135 1481 Pfam MutS domain III 784 1108 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cmo16g00135 1481 ProSitePatterns DNA mismatch repair proteins mutS family signature. 1241 1257 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cmo16g00135 1481 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 459 1400 - -
Cmo16g00135 1481 MobiDBLite consensus disorder prediction 388 410 - -
Cmo16g00135 1481 SMART cap10 50 302 IPR006598 -
Cmo16g00135 1481 SMART DNAend 791 1143 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cmo16g00135 1481 Pfam MutS domain I 491 601 IPR007695 GO:0005524|GO:0006298|GO:0030983
Cmo16g00135 1481 Pfam Glycosyl transferase family 90 1 339 IPR006598 -
Cmo16g00135 1481 SUPERFAMILY DNA repair protein MutS, domain II 616 697 IPR036678 GO:0005524|GO:0006298|GO:0030983
Cmo16g00135 1481 Gene3D - 782 1108 - -
Cmo16g00135 1481 SUPERFAMILY DNA repair protein MutS, domain I 486 599 IPR016151 GO:0005524|GO:0006298|GO:0030983
Cmo16g00135 1481 Coils Coil 984 1004 - -
Cmo16g00135 1481 Gene3D - 1116 1393 IPR027417 -
Cmo16g00135 1481 Gene3D DNA repair protein MutS, domain I 483 609 IPR016151 GO:0005524|GO:0006298|GO:0030983
Cmo16g00135 1481 Gene3D - 958 1084 - -
Cmo16g00135 1481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1116 1358 IPR027417 -
Cmo16g00135 1481 SUPERFAMILY DNA repair protein MutS, domain III 780 1113 IPR036187 -
Cmo16g00135 1481 Pfam MutS domain V 1163 1357 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cmo16g00135 1481 SMART mutATP5 1160 1359 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cmo16g00135 1481 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 459 1400 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Cmo16g00135 1481 MobiDBLite consensus disorder prediction 427 455 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00135 K08736 MSH3; DNA mismatch repair protein MSH3 - csv:101214720 1609.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00269 Cmo-Chr10:1183016 Cmo16g00135 Cmo-Chr16:625008 3.43E-53 dispersed
Cmo14g01893 Cmo-Chr14:14135941 Cmo16g00135 Cmo-Chr16:625008 4.58E-19 dispersed
Cmo16g00135 Cmo-Chr16:625008 Cmo18g01270 Cmo-Chr18:12355388 4.64E-153 dispersed
Cmo16g00957 Cmo-Chr16:6331694 Cmo16g00135 Cmo-Chr16:625008 3.54E-38 dispersed
Cmo18g00343 Cmo-Chr18:2253069 Cmo16g00135 Cmo-Chr16:625008 3.06E-17 dispersed
Cmo16g00132 Cmo-Chr16:617793 Cmo16g00135 Cmo-Chr16:625008 3.79E-150 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g655 . . . . . . . . Cmo16g00135 . . . . . Sed08g0333 . . Bhi01g01330 Tan01g0263 Cmetu06g0071 . Hepe07g0166 Mch10g0163 . Cla01g00411 Cam01g0429 Cec01g0420 Cco01g0442 Clacu01g0430 Cmu01g0412 Cre09g2100 Cone1ag1153 Cone5ag0862 . . Lsi05g01236 . . Cme06g00988 . Blo09g00106 . . . . . . . . . Cma16g00130 . Car16g00115 . . . . . . . . . . Cla05g00871 Cam05g0960 Cec05g0964 Cco05g0964 Clacu05g0946 Cmu05g0903 Cre05g0987 . Csa03g01702 Chy06g00938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007018 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00135 Cmo_Chr16 FPKM 0.0 0.0 0.0 1.160992 12.095623 14.315913 9.583005 0.543028 0.457526 0.0