Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00143 ATGGGTATGGAGTTGACACGCTTCCTTCTCATTTTCATCGTCTACTTCGAGCTCTGCATTTTGAGCTCCAATGGTATTATAGACCAGAATGAGATTATTATCGACAGAGAAAGCTTGATTTCTTTCAAAGCTTCGCTAGAAACCTCCGAAATTCTGCCATGGAACTCATCACATCCTCACTGCTTTTGGACTGGAGTTTCTTGCCGGCTCGGTCGAGTTACAGAGCTCTCTCTTTCATCTCTTTCGCTCAAAGGCCGACTCTCTCAGTCGCTTTTCAACATTTCGAGTCTCTCTGTTCTTGACCTTTCAAACAACTTTCTCTATGGCTCAATCCCACCTCAGATATCCAATCTTCGGAGCTTGAAGGTGCTCGCTCTCGGCGATAATCATTTTTCCGGTGATTTCCCAATCGAGCTCACCGAGTTGTCTCAGTTGGAGAATCTCAAGTTGGGGACTAATTTATTCACAGGTAAAATCCCGCCGGAGATTGGAAATTTGAAGCTGCTACGGACCCTTGACCTCTCCAGCAATGCCTTCGTCGGAAATGTCCCGCCCCACATCGGAAACCTGACGGGGATTCTATCATTGGACCTCGGTAACAATCTTTTATCAGGTTCACTCCCATTGACTATCTTTACTGACCTTAAATCTTTAACGTCTCTGGACATTTCAAACAATTCGTTTTCGGGTTCAATCCCACCTGAAATTGGAAACCTACAGCATTTGACTGATCTTTATATCGGCATTAACCACTTTTCCGGTGAGTTGCCTCCTGAAGTTGGCAACCTTGTATTGCTGGAGAACTTTTTTTCGCCTTCTTGTTCTTTAACTGGTCCATTACCTGACGAACTATCCAAGTTGAAATCATTGAGCAAACTGGACCTTTCATACAACCCACTTGGGTGTTATATCCCGAGATCGATTGGTGAGTTACAGAACTTAACTATATTGAATCTGGTTTACACTCAGCTTAATGGTTCTATTCCTGCTGAGCTCGGGAGGTGCAGAAATTTGAAAACATTGATGCTTTCATTCAACTTTCTATCTGGGGTGTTACCACAAGAGCTTTCAGAGCTTCCCATGTTGACATTTTCTGCTGAGAAGAATCAGCTTTCTGGGCCATTACCTTCCTGGCTTGGCAAATGGGATCATGTTGATTCTATTTTACTCTCGAGTAATCATCTCATGGGGGAAATCCCTCCTGAGATTGGAAATTGCTCGATGCTTAATCACCTGAGTTTGAGCAATAACTTGTTGACAGGTCCAATACCTAAAGAAATTTGTAATGCTGCATCCTTGATGGAGATTGATCTTGACAGCAATTTCCTCTCGGGTACGATTGATGATACATTTGTGCTGTGTAGAAACCTTACGCAGCTGGTTTTGGTAGACAATCAGATTGTTGGGGCAATACCAGAGTACTTCTCAAACCTTTCCTTAATGGTAATCAACCTTGACTCTAATAATTTTACCGGTTCTTTACCTAGAAATATATGGAACTCAGTGGATTTGATGGAGTTTTCTGCCGCAAATAACCTGTTGGAGGGTCATCTCCCTTCAGAAATTGGCTATGCAGCTTCACTTGAGAGGCTTGTTCTCAGCAGCAATAGGTTGACAGGCGGTATACCACATGAGATTGGAAATCTCACAGCTCTTTCAGTTCTAAATTTGAATTCCAATCTGCTTGAAGGAACTATTCCTGCCATGCTTGCAGATTGCACTTCACTTACCACGTTGGACCTTGGAAACAATAGTCTAAATGGGTTGATTCCTGAAAGACTTGCTAACCTTACTGAATTACAGTGTCTAGTTCTGTCACGCAACATGTTATCTGGAGCCATACCTTCCAAGCCCTCTGCTTATTTTCGACAGGTTACTATTCCTGATTTGAGCTTTGTTCAGCATCATGGTGTTTTCGATCTGTCTCATAATAGATTGTCTGGTACCATACCTGACGAACTGGGGAATTGTGTTGTTGTAGTTGATCTTTTGCTGAATAATAATCTACTTTCTGGAGAGATTCCTAGATCTCTCTCTCACTTAACGAACCTGACAACCTTGGATTTGTCTAGCAATATGCTTACTGGTCCTATTCCCACAGAGATCGGCAATGCTCTCAAGCTCCAAGGCCTGTATCTATGGAATAATCACCTGGTGGGTACAATCCCCGAAAGCTTCAGTCATTTGAGTAGCTTGGTAAAGTTGAACTTGACTGGAAATAAATTATCTGGTTCAATTCCAAGAACTGTTGGTGATCTGAAAGCTCTAACTCATTTGGATTTAAGTTCTAATGAGTTGGATGGTGATCTTCCTTCTTCTCTGTCCAACATGTTGAATCTTGTCGGGCTGTATGTACAGGAGAACAAGCTTTCTGGTCAGGTTGTTGAACTTTTCCCAAGTTCCATGACATGGAAGATTGAAACTTTGAATTTGAGTAATAACTATTTTGAGGGTGTCCTTCCACGAACATTGGGCAACCTTTCATACTTGACAACGTTGGATCTTCATGGAAATAAGTTCACAGGGCAAATCCCTTCAGATTTTGGGGATCTTATGCAACTTGAATACTTAGATGTTTCAAATAACAAGCTCTCAGGAGAAATTCCAGAGAAAATATGCAGCCTTGTCAATATGGTTTACCTGAATATGGCAGACAACAGTCTGGAAGGGCCAATTCCGAGCAGTGGCATTTGCCAGAATCTATCCAGAAGTTCACTTGTGGGTAACAAGGGCCTTTGTGGAAGAATCATGGGTTTGAATTGCCGGATCAAAATCTTGGAGAGATCAGCAGCATTGAATGCTTGGAGCGTTGCTGGGATCATCATTGTTAGTGTTCTTATTGTTCTAACTATCACATTCGCCATGCGGAGATGGATCATTCGAAGCCAGAGAGAGAACGATCCAGAGGAAATGGAGGAAAGAAAATTAAAATGTTTCATAGACCCTAATCTCTATTTCTTAAGCAGCAGCAGCAGATCGAGAGAGCCTTTAAGCATCAATGTAGCCACGTTCGAGCAACCCCTTCTGAAATTAACTTTGGCTGATATTCTCGAAGCAACCAATAACTTCTGTAAAACAAACATCATTGGAGATGGAGGATTCGGGACAGTGTACAAGGCCACATTACCTGATGGAAAAATTGTTGCCGTGAAGAAACTAAGCGAAGCAAAAACACAGGGGCACAGAGAATTTATAGCTGAAATGGAAACCATAGGCAAAGTGAAGCACAATAATCTTGTACCACTACTTGGCTACTGTTCTCTTGGGGAGGAGAAGCTCCTAGTCTATGAATATATGGTGAATGGTAGCTTGGATCTTTGGCTAAGAAACCGAATCGGTACCCTCGAAGTCCTTAACTGGGAGACTCGATTTAAAGTCGCTTCAGGCGCAGCTCGTGGATTGGCGTTTCTTCACCATGGATTCATCCCCCACATCATTCATAGGGATGTTAAAGCAAGCAATATACTCCTCAACCAAGACTTCGAACCAAAAGTTGCCGACTTCGGGTTGGCTAGACTGATCAGTGCTTGTGAGACTCATGTCACAACTGAGATTGCTGGAACTTTTGGTTACATCCCACCGGAGTACGGGCAGAGTGGGAGGTCTACTACAAAGGGGGACGTTTATAGCTATGGTGTAATCCTACTGGAATTGGTAACTGGGAAGGAACCAACAGGGCCCAACTTTAAAGAGATTGAGGGCGGAAACCTGGTTGGTTGGGTGTTTCAGAAGATCAACAAGGGGCAGGCTGCAGACGTTCTTGACGCCACAGTACTGAATGCTGATTCCAAGCATATGATGCTTCAAACCCTTCAGATTGCTTGGGTTTGCTTATCAGAAAATCCTGCTAACAGACCTTCCATGCTTCAGGTATTGAAGTTTCTTAAAGGGATCAAAGATGTGTAA 3906 42.88 MGMELTRFLLIFIVYFELCILSSNGIIDQNEIIIDRESLISFKASLETSEILPWNSSHPHCFWTGVSCRLGRVTELSLSSLSLKGRLSQSLFNISSLSVLDLSNNFLYGSIPPQISNLRSLKVLALGDNHFSGDFPIELTELSQLENLKLGTNLFTGKIPPEIGNLKLLRTLDLSSNAFVGNVPPHIGNLTGILSLDLGNNLLSGSLPLTIFTDLKSLTSLDISNNSFSGSIPPEIGNLQHLTDLYIGINHFSGELPPEVGNLVLLENFFSPSCSLTGPLPDELSKLKSLSKLDLSYNPLGCYIPRSIGELQNLTILNLVYTQLNGSIPAELGRCRNLKTLMLSFNFLSGVLPQELSELPMLTFSAEKNQLSGPLPSWLGKWDHVDSILLSSNHLMGEIPPEIGNCSMLNHLSLSNNLLTGPIPKEICNAASLMEIDLDSNFLSGTIDDTFVLCRNLTQLVLVDNQIVGAIPEYFSNLSLMVINLDSNNFTGSLPRNIWNSVDLMEFSAANNLLEGHLPSEIGYAASLERLVLSSNRLTGGIPHEIGNLTALSVLNLNSNLLEGTIPAMLADCTSLTTLDLGNNSLNGLIPERLANLTELQCLVLSRNMLSGAIPSKPSAYFRQVTIPDLSFVQHHGVFDLSHNRLSGTIPDELGNCVVVVDLLLNNNLLSGEIPRSLSHLTNLTTLDLSSNMLTGPIPTEIGNALKLQGLYLWNNHLVGTIPESFSHLSSLVKLNLTGNKLSGSIPRTVGDLKALTHLDLSSNELDGDLPSSLSNMLNLVGLYVQENKLSGQVVELFPSSMTWKIETLNLSNNYFEGVLPRTLGNLSYLTTLDLHGNKFTGQIPSDFGDLMQLEYLDVSNNKLSGEIPEKICSLVNMVYLNMADNSLEGPIPSSGICQNLSRSSLVGNKGLCGRIMGLNCRIKILERSAALNAWSVAGIIIVSVLIVLTITFAMRRWIIRSQRENDPEEMEERKLKCFIDPNLYFLSSSSRSREPLSINVATFEQPLLKLTLADILEATNNFCKTNIIGDGGFGTVYKATLPDGKIVAVKKLSEAKTQGHREFIAEMETIGKVKHNNLVPLLGYCSLGEEKLLVYEYMVNGSLDLWLRNRIGTLEVLNWETRFKVASGAARGLAFLHHGFIPHIIHRDVKASNILLNQDFEPKVADFGLARLISACETHVTTEIAGTFGYIPPEYGQSGRSTTKGDVYSYGVILLELVTGKEPTGPNFKEIEGGNLVGWVFQKINKGQAADVLDATVLNADSKHMMLQTLQIAWVCLSENPANRPSMLQVLKFLKGIKDV 1301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 650920 654825 - CmoCh16G001430.1 Cmo16g00143 399178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00143 1301 ProSitePatterns Protein kinases ATP-binding region signature. 1029 1052 IPR017441 GO:0005524
Cmo16g00143 1301 Gene3D Ribonuclease Inhibitor 141 211 IPR032675 -
Cmo16g00143 1301 ProSiteProfiles Protein kinase domain profile. 1023 1301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00143 1301 Gene3D Ribonuclease Inhibitor 364 428 IPR032675 -
Cmo16g00143 1301 Gene3D Ribonuclease Inhibitor 429 501 IPR032675 -
Cmo16g00143 1301 Gene3D Ribonuclease Inhibitor 34 140 IPR032675 -
Cmo16g00143 1301 PRINTS Leucine-rich repeat signature 576 589 - -
Cmo16g00143 1301 PRINTS Leucine-rich repeat signature 681 694 - -
Cmo16g00143 1301 Pfam Leucine rich repeat N-terminal domain 35 68 IPR013210 -
Cmo16g00143 1301 SMART serkin_6 1023 1295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00143 1301 Pfam Leucine Rich Repeat 290 311 IPR001611 GO:0005515
Cmo16g00143 1301 Pfam Leucine Rich Repeat 217 239 IPR001611 GO:0005515
Cmo16g00143 1301 Gene3D Transferase(Phosphotransferase) domain 1 1099 1301 - -
Cmo16g00143 1301 SUPERFAMILY Protein kinase-like (PK-like) 1004 1295 IPR011009 -
Cmo16g00143 1301 SUPERFAMILY L domain-like 55 363 - -
Cmo16g00143 1301 Gene3D Phosphorylase Kinase; domain 1 986 1098 - -
Cmo16g00143 1301 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 958 1300 - -
Cmo16g00143 1301 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 134 344 - -
Cmo16g00143 1301 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 368 451 - -
Cmo16g00143 1301 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 805 893 - -
Cmo16g00143 1301 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 452 787 - -
Cmo16g00143 1301 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 70 136 - -
Cmo16g00143 1301 Pfam Leucine rich repeat 708 766 IPR001611 GO:0005515
Cmo16g00143 1301 Pfam Leucine rich repeat 806 864 IPR001611 GO:0005515
Cmo16g00143 1301 Pfam Leucine rich repeat 551 610 IPR001611 GO:0005515
Cmo16g00143 1301 SUPERFAMILY L domain-like 368 618 - -
Cmo16g00143 1301 Gene3D Ribonuclease Inhibitor 212 363 IPR032675 -
Cmo16g00143 1301 Gene3D Ribonuclease Inhibitor 624 923 IPR032675 -
Cmo16g00143 1301 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1145 1157 IPR008271 GO:0004672|GO:0006468
Cmo16g00143 1301 Gene3D Ribonuclease Inhibitor 502 623 IPR032675 -
Cmo16g00143 1301 SMART LRR_sd22_2 454 480 - -
Cmo16g00143 1301 SMART LRR_sd22_2 573 599 - -
Cmo16g00143 1301 SMART LRR_sd22_2 681 707 - -
Cmo16g00143 1301 SMART LRR_sd22_2 851 877 - -
Cmo16g00143 1301 SMART LRR_sd22_2 94 120 - -
Cmo16g00143 1301 SMART LRR_sd22_2 215 241 - -
Cmo16g00143 1301 SMART LRR_sd22_2 753 779 - -
Cmo16g00143 1301 SMART LRR_sd22_2 166 192 - -
Cmo16g00143 1301 SMART LRR_sd22_2 287 313 - -
Cmo16g00143 1301 Pfam Protein tyrosine and serine/threonine kinase 1027 1295 IPR001245 GO:0004672|GO:0006468
Cmo16g00143 1301 SMART LRR_typ_2 287 311 IPR003591 -
Cmo16g00143 1301 SMART LRR_typ_2 851 875 IPR003591 -
Cmo16g00143 1301 SMART LRR_typ_2 681 705 IPR003591 -
Cmo16g00143 1301 SMART LRR_typ_2 827 850 IPR003591 -
Cmo16g00143 1301 SMART LRR_typ_2 549 573 IPR003591 -
Cmo16g00143 1301 SMART LRR_typ_2 94 118 IPR003591 -
Cmo16g00143 1301 SMART LRR_typ_2 142 166 IPR003591 -
Cmo16g00143 1301 SMART LRR_typ_2 729 752 IPR003591 -
Cmo16g00143 1301 SMART LRR_typ_2 753 777 IPR003591 -
Cmo16g00143 1301 SMART LRR_typ_2 190 214 IPR003591 -
Cmo16g00143 1301 SMART LRR_typ_2 215 239 IPR003591 -
Cmo16g00143 1301 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 958 1300 - -
Cmo16g00143 1301 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 70 136 - -
Cmo16g00143 1301 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 134 344 - -
Cmo16g00143 1301 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 368 451 - -
Cmo16g00143 1301 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 452 787 - -
Cmo16g00143 1301 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 805 893 - -
Cmo16g00143 1301 SUPERFAMILY L domain-like 627 914 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02248 Cmo-Chr4:16807180 Cmo16g00143 Cmo-Chr16:650920 2.36E-13 dispersed
Cmo15g00912 Cmo-Chr15:4628864 Cmo16g00143 Cmo-Chr16:650920 1.60E-42 dispersed
Cmo16g00143 Cmo-Chr16:650920 Cmo13g00865 Cmo-Chr13:7899484 0 dispersed
Cmo16g00436 Cmo-Chr16:2077034 Cmo16g00143 Cmo-Chr16:650920 7.48E-10 dispersed
Cmo18g01192 Cmo-Chr18:11957083 Cmo16g00143 Cmo-Chr16:650920 9.27E-10 dispersed
Cmo16g00143 Cmo-Chr16:650920 Cmo18g01258 Cmo-Chr18:12320265 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74947 PF07714 PK_Tyr_Ser-Thr 2.10E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00143 - - csv:101215443 2234.14