Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00146 ATGGGGTCAAGAATGTTGAATGTTAGGAGGAAAATGGATGGTTATGGTGAAGTGTGTCTGCTTGGAGATGGCTTTGATCCGAGTGGAGCTGTGAGGATGAGGGAAGATGAATATGATAGCAGATCAGGCAGCGACAACATAGATGGTGCTTTATCTGGGGACGATCGAGACGCTAACGACGAACAACAACCGAAAGGGAAAAAGTACCATAGGCATACTCCCCATCAGATCCAAGAGCTTGAGATTTTCTTCAAGGAATGCCCTCATCCTGATGATAAACAAAGAAGTGAACTTAGTAGGAGGCTGTGTTTGGAGACAAAGCAAGTGAAGTTCTGGTTTCAAAATCGTCGAACACAGATGAAGACACAAATAGAACGCCATGAGAATGCAATTCTTAAGCAAGAAAATGATAAGCTCCGAGCCGAGAATAGTGTGATGAAGGATGCTATTGCTAATCCAACATGTAATACTTGTGGTGGCCCTTCAATTCCTGGTCATCTATCATTTGAAGAACACCATCTTAGAATTGAGAATGCCAGATTAAGAGAGGAACTGCACCGGTTATATACTGTCACCAACAAGTTCCTGGGCTGGCCAGTTTCTTCACCCTTTGGCAATCAGGGCTCTTCACCAAGTTCTGACTCTTGCTTGGAACTGTCTGTTGGAAGAAGTGGAATCGGAAGGTCGAGTACCGTTTCTGATTCTATGGGGCTGGGAAACGGACATTTCGGTGCTGGCCCTGTGATGCCTATTAGTAAGCCCGAAATGGGCGTCTCAGGCAATGATATACCACTTGACAGAACAATATATGTGGATTTTGCTTTGGCAGCTATGAATGAATTAGTTGAGATGGCTCAAACGGATGCCCCCCTTTGGATCAGAAGTCGGGATGGTGGTAGCAGAGAGACATTGAACCTCGATGAATATTCAAGGACTTTTCCTTCTTCAGCTGGCATGAAGCACATTAATTGGACAACAGAGGCCACCAGAGATTCTACCATGGTCATCATCAACAGCTTGGCACTTGTCGAGACGTTGATGGATGCAAACCGGTGGGCAGAAATGTTTCCTTGCTTGATAGCTAGAGCTACGACAATCGACGTGATAACTAGTGGCATGTGTGGAACCAGAAACGGTGCATTACAATTGATGCATGCTGAACTCCGAGTACTTTCCCCGCTGGTTCCTGTGCGTACGCTTAAGTTCCTTCGCTTCTGCAGGCAGCATGCTGATGGTTTATGGGCTGTAGTTGATGTTTCCATTGGAGAAGGTTCGGATTCGAACACGTTTCTCGGTTGCAGGAGGCTCCCTTCAGGCTGTGTTGTGGAAGATATGCCTAATGGTTTCTCCAAGGTAACATGGGTGGAACATACAGAATATGATGAGACTGTTATACACCAGCTTTACCGCCAGTTAATTAGTTCAGGCATCGGTTTCGGTTCACAACGGTGGCTTGCTAACCTTCAAAGACAATGCGAATGTTTGGCGATTCTGATGTCTTCTACTATTCCCACTGAAGATCCTGCAGGAATATCTCCGGGCGGTAGAAGAAGTATGCTGAAGCTATCGCAGCGTATGGTGGATAAATTCTGTTCGGGGCTTTGTAGTTCAAGTTTACATAAGTGGGACAAGCTGGTTGTTGGTAATATTAGTGAAGATGTAAAAGTGATGGCTAGAAAGAGCATCAACGAGCCTGGCGAGCCACCGGGTATCGTGTTGAGTGCTGCAACTTCAGTTTGGATGCCTGTAACTCAGCAGAGGTTGTTTGCATTCTTGCAAGATGATCGCTTACGGAGTGAGTGGGATATTTTATCCAACAGTAGGCCAATGCTAGAGATGGTTCGTATCTCGAAAGGCCAGGATGCGGATAACCGTGTTTCTCTCCTACGTGCGAATCCCATGAATGCTAATGAGAGCACCATGTTCATATTGCAAGAGACTTGGACTGATATATCAGGCTCACTGGTTGTTTACGCTCCAGTCGACACAGCCTCGGTTAGTTTGATGATGCGTGGAGGAGATTCCGCTTACGTATCGCTATTACCATCGGGATTTGCAATTCTCCCCAATGCTACAAACAACGACAAAGACGCATCGATGAAGTCAGGCATGAACAGTGGGCATGATAATGGATGTCTGCTCACAGTAGCATTCCAGATTCTGGTGAATAATCTTCCAACGGCCAAACTCACGGTCGAGTCGGTTGAGACGGTTAACAATCTCATTTTTTGCACCATTCGAAAGATCAAAACTGCCCTTCAAGTATCATAA 2271 45.75 MGSRMLNVRRKMDGYGEVCLLGDGFDPSGAVRMREDEYDSRSGSDNIDGALSGDDRDANDEQQPKGKKYHRHTPHQIQELEIFFKECPHPDDKQRSELSRRLCLETKQVKFWFQNRRTQMKTQIERHENAILKQENDKLRAENSVMKDAIANPTCNTCGGPSIPGHLSFEEHHLRIENARLREELHRLYTVTNKFLGWPVSSPFGNQGSSPSSDSCLELSVGRSGIGRSSTVSDSMGLGNGHFGAGPVMPISKPEMGVSGNDIPLDRTIYVDFALAAMNELVEMAQTDAPLWIRSRDGGSRETLNLDEYSRTFPSSAGMKHINWTTEATRDSTMVIINSLALVETLMDANRWAEMFPCLIARATTIDVITSGMCGTRNGALQLMHAELRVLSPLVPVRTLKFLRFCRQHADGLWAVVDVSIGEGSDSNTFLGCRRLPSGCVVEDMPNGFSKVTWVEHTEYDETVIHQLYRQLISSGIGFGSQRWLANLQRQCECLAILMSSTIPTEDPAGISPGGRRSMLKLSQRMVDKFCSGLCSSSLHKWDKLVVGNISEDVKVMARKSINEPGEPPGIVLSAATSVWMPVTQQRLFAFLQDDRLRSEWDILSNSRPMLEMVRISKGQDADNRVSLLRANPMNANESTMFILQETWTDISGSLVVYAPVDTASVSLMMRGGDSAYVSLLPSGFAILPNATNNDKDASMKSGMNSGHDNGCLLTVAFQILVNNLPTAKLTVESVETVNNLIFCTIRKIKTALQVS 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 664145 668610 - CmoCh16G001460.1 Cmo16g00146 399181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00146 756 ProSitePatterns 'Homeobox' domain signature. 98 121 IPR017970 GO:0000981|GO:0006355
Cmo16g00146 756 MobiDBLite consensus disorder prediction 26 73 - -
Cmo16g00146 756 Coils Coil 117 149 - -
Cmo16g00146 756 SUPERFAMILY Bet v1-like 264 494 - -
Cmo16g00146 756 MobiDBLite consensus disorder prediction 29 43 - -
Cmo16g00146 756 Pfam START domain 273 494 IPR002913 GO:0008289
Cmo16g00146 756 ProSiteProfiles START domain profile. 263 497 IPR002913 GO:0008289
Cmo16g00146 756 MobiDBLite consensus disorder prediction 50 73 - -
Cmo16g00146 756 CDD homeodomain 67 123 IPR001356 GO:0003677
Cmo16g00146 756 SMART HOX_1 65 127 IPR001356 GO:0003677
Cmo16g00146 756 Gene3D - 53 139 - -
Cmo16g00146 756 SMART START_1 272 494 IPR002913 GO:0008289
Cmo16g00146 756 CDD START_ArGLABRA2_like 272 493 - -
Cmo16g00146 756 Pfam Homeodomain 67 121 IPR001356 GO:0003677
Cmo16g00146 756 SUPERFAMILY Bet v1-like 522 750 - -
Cmo16g00146 756 SUPERFAMILY Homeodomain-like 52 123 IPR009057 -
Cmo16g00146 756 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 24 754 IPR042160 -
Cmo16g00146 756 ProSiteProfiles 'Homeobox' domain profile. 63 123 IPR001356 GO:0003677
Cmo16g00146 756 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 24 754 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo16g00146 Cmo18g01257 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00146 Cmo-Chr16:664145 Cmo17g00020 Cmo-Chr17:89213 0 dispersed
Cmo14g02074 Cmo-Chr14:15106336 Cmo16g00146 Cmo-Chr16:664145 0 wgd
Cmo16g00146 Cmo-Chr16:664145 Cmo18g01257 Cmo-Chr18:12311482 0 wgd
Cmo16g00146 Cmo-Chr16:664145 Cmo08g00893 Cmo-Chr8:5801325 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11245 PF01852 START 1.40E-47 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00146 K09338 - csv:101218216 1309.28