Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00151 ATGGCGGACGATGATTACAATGACCTCGACATGGGATATGACGATGAGCCACCAGAACCAGAATTGGAGTTGATTAATTATAGTGGAACTGAAAATGATGTACAGGAAGGTGCTGAAGAAGAATTGGATAATAATAACAATGATGATGTTCCTGGTGAACCTGTTGAAGCAGAGGAAAAGGAAGATGAAGAACCTGTTGAACGTGTGCGTAAAACCTCAAAATTTATGACAAAATATGAACGTGCTAGAATTTTGGGTACACGTGCCCTCCAAATCAGCATGAATGCTCCTGTGATGGTTGAATTGGAGGGCGAGACTGATCCACTTGAGATTGCAATGAAGGAGCTTCGTGAGCGGAAGATACCCTTCACCATCCGTCGCTACCTGCCAGATGGAAGTTATGAAGACTGGGGCGTTGATGAACTGATTGTGGAGGACTCTTGGAAGAGGCAAGTTGGTGGCGCTTGA 468 44.66 MADDDYNDLDMGYDDEPPEPELELINYSGTENDVQEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 683803 686723 + CmoCh16G001510.1 Cmo16g00151 399186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00151 155 Pfam RNA polymerase Rpb6 72 123 IPR006110 GO:0003677|GO:0003899|GO:0006351
Cmo16g00151 155 SUPERFAMILY RPB6/omega subunit-like 4 145 IPR036161 GO:0003677|GO:0003899|GO:0006351
Cmo16g00151 155 Hamap DNA-directed RNA polymerase subunit Rpo6 [rpo6]. 74 129 IPR006111 GO:0003677|GO:0003899|GO:0006351
Cmo16g00151 155 MobiDBLite consensus disorder prediction 1 69 - -
Cmo16g00151 155 PANTHER DNA-DIRECTED RNA POLYMERASES II AND V SUBUNIT 6B 1 154 - -
Cmo16g00151 155 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 1 154 - -
Cmo16g00151 155 MobiDBLite consensus disorder prediction 34 62 - -
Cmo16g00151 155 MobiDBLite consensus disorder prediction 1 21 - -
Cmo16g00151 155 ProSitePatterns RNA polymerases K / 14 to 18 Kd subunits signature. 77 91 IPR020708 GO:0003677|GO:0003899|GO:0006351
Cmo16g00151 155 PIRSF RpoK/RPB6 1 146 IPR006111 GO:0003677|GO:0003899|GO:0006351
Cmo16g00151 155 Gene3D - 23 146 IPR036161 GO:0003677|GO:0003899|GO:0006351
Cmo16g00151 155 PIRSF RPB6 1 146 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Cmo16g00151 155 SMART RNA_pol_Rpb6_2 70 123 IPR006110 GO:0003677|GO:0003899|GO:0006351
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00151 K03014 RPABC2, RPB6, POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2 - csv:101219320 231.491
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo16g00151 Cmo18g01251 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00151 Cmo-Chr16:683803 Cmo18g01251 Cmo-Chr18:12279148 1.86E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g605 . . . . Bpe03g00134 . . Bma14g02062 Cmo16g00151 Cmo18g01251 . . . . Sed07g1061 . Cpe14g00122 Bhi01g01356 Tan01g0284 Cmetu04g3099 . Hepe07g0182 Mch10g0178 . . . . . . . . . Cone5ag0839 . . Lsi05g01256 . . Cme06g00972 . Blo09g00082 . . . . . . . . . Cma16g00144 Cma18g01228 Car16g00125 Car18g01132 Cpe09g00105 . . . . . . . . Cla05g00856 Cam05g0942 Cec05g0947 Cco05g0947 Clacu05g0929 Cmu05g0887 Cre05g0972 . Csa03g01686 Chy06g00919 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003726 1 2 1 1 1 1 2 2 1 1 1 2 2 1 2 2 2 2 2 2 2 1 2 1 1 1 1 2 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00151 Cmo_Chr16 FPKM 1.721698 2.066035 29.527191 30.434235 0.277049 0.177872 0.274395 1.780767 0.825386 2.313908