Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo16g00152 | ATGGCATCTTCTCGTCTGGCTGGAGGATTAGCTCAGTCTCCATCAAGTTCTGGGATTTTCTACCAAGGGGAAGGGCAGTCCCCAGCTATTGTTAATTCTCACTTGGGCCAATCATTTGCAAATTCATCAAATTCAATCCCAGGAACTGGATGTTCTGATTTTGGTCCAGTTTCCGGAGACATGAACAATGCAGTTTTAAATAGTGTGGCAAATTCAGGACCCAGTGTGGGTGCAAGTTCATTAGTTACAGATGCAAACTCTGCCCTTTCAGGGGGGCCACATTTGCAAAGGAGTGCAAGCATCAATACAGAGTCATACATGCGTTTGCCTGCATCGCCCATGTCATTCAATTCAAATAACATTAGTGTGTCAGGCTCCTCGGTTATTGATGGATCCTGCGTAGTGCAGCAAAATTCTCACCAGGACCAAAATATCCAACACGTGCAGCAACATACACATCAAGGTGCTTCACATGCCACATCTTTACCAACATCACAAATAGGCCAAGTATCATTTCCGATGGGTGCTAAACGTCAGGGATCTTTCATTCCAGATCCAAATAACTATTCTCAGGTGCAGAAGAAACCACGGCTAGATATAAAGCAGGAAGATATGCTGCAACAGCAAGTTTTGCAGCAGCTATTTCAGAGACAGGATTCCATGCTGTCACAAAACCGTAACTCACAATTACAAGCTTTATTTCAACAGCAAAGAATGCGGCAACAGCAGCAAATTTTGCATTCTCTACCTCAGTACAGGGCTCAGTTTCAGCAGCAGCAGCAGATACAGATGAGGCAGCAATTGCAACAACAACAGCAAGCAATGCTGCCAGGATCACCCATGAATCGGCCTTCATATGATACTGGTGGTGTTTGTGCCCGTCGGCTGATGCAATATCTATATCATCTGCGACAAAGACCTCCTGATAATAGTATAGCCTACTGGAGAAAGTTTGTAACAGAGTATTACTCTCCTCGTGCGAAGAAAAGATGGTGCTTGTCATTGTATGAGAATGTTGGCCACCACGCTCTTGGTGTGTTTCCCCAGGCAGCTATGGATGCATGGCAGTGCGACATCTGTGGTTCCAAATCAGGAAGGGGCTTTGAGGCTACATTTGAAGTACTCCCGAGACTCGGTGAGATCAAATTTGGAAGTGGAGTTATTGATGAGTTTTTAATTCTGGAACGTCCTCAAGAAAGGAGATTATCTTCCGGAATTATGCTGTTAGAATATGCAAAAGCATTTCAAGAGAGTGTATATGAGCAACTTCGTGTTGTTCGTGAGGGTCAGCTTCGTGTAATATTCACGCAAGACTTGAAGATTTTGTCTTGGGAATTTTGTGCACGGCGTCATGAAGAACTTCTTCCACGTAGGTTGGTTGCATCTCAGGTGAATCAGCTGGTACTGGTTGCCCAGAGATGCCAAAGCACAATAGCTGAAAGTGGGCCTGATGGTGTTTCTCAGAAAGATTTGCAGACGAATAGCAATATGGTGCTGGCAGCTGGTCGTCAGCTTGCAAAGAGTCTGGAGTTGCAGTTGCTGAATGACTTGGGTTTCCCTAAAAGATACGTGAGGTGTTTGCAGATATCGGAGGTTGTCAACAGTATGAAAGATCTTATTGGTTTCTGCCGGGATCAAAAAGTTGGGCCTATTGAGGGCTTGAAAAATTATCCTAGACATGCCACTGCAGCCAAGCTCAAGATGCAAAAGATGCAGGAGATGGAACAGTTAGCAAGTATTCAAGGTCTTCCCACAACAGTAAATAAGCTGATGGCAATGCATCCTGAACATGATAACCATGGGATTAATAACCATCAGATGATTGGTCGAGGAGGTTTGAGTGGTTCGGCACAAGCTGCTTTGGCAATGACTACGTACCAGAATATCCTCATGAGACAAAGCTCTATGAACTCCAATCCCAGCCCACATCAACAGGAGGCCTTGTCTTCTTTCAATAATTCCAACTATAATCCATCCCCTACACTCCAGGGGAATGCATTCTTGATGCCTGGGTCCATACAGAACTCTGTTGGTAGCTTTTCAAGCGCCCAGCAAACCTTGCAAAAGCAATCGCAGCAGCTGCAACAGCATCCACCAAATGCTGGCTCCTTGGTCCAACAAAATTATCCTCAGACGATTCAAGGCAGCCAGGCCCTACAGCAACAGATGATCCAGGAGCTACTGCAGATGTCAAGTAACAGTAAGAGTGGCGGTTTGCAACAGCCACCCCTTACCGGACCAAATGCAAATAGAAGTTTGACAAGAAGGGGTACGGGTTTTGTGGGAAACACCTCAGTTGCAGCTGTGGCATCTGGAAATCTGCCTGGGAGCAATGTCCCTTGCCCTGGTCCGAGTAGAAGCAATAGCTTCAAAGCTGCTTCAAATAGCGAGTCCTCTGCTGGTAATAGTGGGTTCAATCAAAAGGCTTCTGATTTTCCGGAAGACCTTCATCTGCCAGAAAGTTTGGTTGAAGATATAGGCCAAGATTTCCCTGAAAACGGGTTCCTTAACAATGACCTTGATGATGATTTGGGTTATGTCTGGAAGGCTTGA | 2553 | 45.4 | MASSRLAGGLAQSPSSSGIFYQGEGQSPAIVNSHLGQSFANSSNSIPGTGCSDFGPVSGDMNNAVLNSVANSGPSVGASSLVTDANSALSGGPHLQRSASINTESYMRLPASPMSFNSNNISVSGSSVIDGSCVVQQNSHQDQNIQHVQQHTHQGASHATSLPTSQIGQVSFPMGAKRQGSFIPDPNNYSQVQKKPRLDIKQEDMLQQQVLQQLFQRQDSMLSQNRNSQLQALFQQQRMRQQQQILHSLPQYRAQFQQQQQIQMRQQLQQQQQAMLPGSPMNRPSYDTGGVCARRLMQYLYHLRQRPPDNSIAYWRKFVTEYYSPRAKKRWCLSLYENVGHHALGVFPQAAMDAWQCDICGSKSGRGFEATFEVLPRLGEIKFGSGVIDEFLILERPQERRLSSGIMLLEYAKAFQESVYEQLRVVREGQLRVIFTQDLKILSWEFCARRHEELLPRRLVASQVNQLVLVAQRCQSTIAESGPDGVSQKDLQTNSNMVLAAGRQLAKSLELQLLNDLGFPKRYVRCLQISEVVNSMKDLIGFCRDQKVGPIEGLKNYPRHATAAKLKMQKMQEMEQLASIQGLPTTVNKLMAMHPEHDNHGINNHQMIGRGGLSGSAQAALAMTTYQNILMRQSSMNSNPSPHQQEALSSFNNSNYNPSPTLQGNAFLMPGSIQNSVGSFSSAQQTLQKQSQQLQQHPPNAGSLVQQNYPQTIQGSQALQQQMIQELLQMSSNSKSGGLQQPPLTGPNANRSLTRRGTGFVGNTSVAAVASGNLPGSNVPCPGPSRSNSFKAASNSESSAGNSGFNQKASDFPEDLHLPESLVEDIGQDFPENGFLNNDLDDDLGYVWKA | 850 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 686930 | 694509 | - | CmoCh16G001520.1 | Cmo16g00152 | 399187 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo16g00152 | 850 | MobiDBLite | consensus disorder prediction | 634 | 706 | - | - | |
Cmo16g00152 | 850 | MobiDBLite | consensus disorder prediction | 773 | 809 | - | - | |
Cmo16g00152 | 850 | MobiDBLite | consensus disorder prediction | 733 | 758 | - | - | |
Cmo16g00152 | 850 | PANTHER | LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED | 184 | 843 | - | - | |
Cmo16g00152 | 850 | PANTHER | LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED | 5 | 151 | - | - | |
Cmo16g00152 | 850 | Pfam | LIM-domain binding protein | 295 | 555 | IPR029005 | - | |
Cmo16g00152 | 850 | PANTHER | LIM DOMAIN-BINDING PROTEIN | 5 | 151 | IPR029005 | - | |
Cmo16g00152 | 850 | PANTHER | LIM DOMAIN-BINDING PROTEIN | 184 | 843 | IPR029005 | - | |
Cmo16g00152 | 850 | MobiDBLite | consensus disorder prediction | 773 | 822 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo15g01487 | Cmo16g00152 | CCT | |
Cmo15g01487 | Cmo16g00152 | ECH | |
Cmo16g00152 | Cmo18g01250 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01058 | Cmo-Chr2:6446630 | Cmo16g00152 | Cmo-Chr16:686930 | 0 | dispersed | |
Cmo04g02535 | Cmo-Chr4:18611539 | Cmo16g00152 | Cmo-Chr16:686930 | 2.19E-110 | dispersed | |
Cmo15g01487 | Cmo-Chr15:10080984 | Cmo16g00152 | Cmo-Chr16:686930 | 0 | dispersed | |
Cmo18g01250 | Cmo-Chr18:12274697 | Cmo16g00152 | Cmo-Chr16:686930 | 7.62E-47 | transposed | |
Cmo16g00152 | Cmo-Chr16:686930 | Cmo18g01248 | Cmo-Chr18:12272278 | 1.54E-173 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo16g00152 | - | - | csv:105434391 | 1326.23 |