Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo16g00158 | ATGGAATCTTTTTCAACTTTTTATGAAGACTACTTCTCCAGCTCCGAGAGTAGTACTTGCCGGCGGACCATATTTTCCGAGAAGGAGCTTATGTTAGCGGCGAGCAATCCCAAGAAGAGGGCCGGCAGGAAGAAGTTTAAGGAGACAAGGCACCCTGTTTACAGAGGGGTCAGGAGGAGGAACTCCGGCAAGTGGGTCTGTGAAGTGAGAGAGCCTAATAAGAAGTCAAGGATTTGGCTTGGCACTTTTCCGACGGCGGAGATGGCGGCTCGGGCTCACGACGTCGCTGCCATGAAGCTTCGAGGTCGCTCTGCTTGTCTCAATTTTGCAGATTCTGCGTGGCGGCTGCCGGAGCCAGCATCTGCTGACGCCAGGGATATTCAGAAGGCGGCGGCGGAGGCGGCGGAGGCATTCCGGCCGGCCGAATCAGATGGGTCTTCTGTTGATGACTCAAGGACGGAAAATATGATGACGGCGGAGACGACGCCAGAAAACGTGTTGTACGTGGATGATGATGCAATTTTTGGGCTGCCGGGATTGTTGGAGGATATGGCTGCAGGGATGATGTTGCCTCCACCTCAGCATTTTCGTGATGACATGGATTTTTATTCTGACGTGTCATTATGGAGCTACTAA | 636 | 52.83 | MESFSTFYEDYFSSSESSTCRRTIFSEKELMLAASNPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAMKLRGRSACLNFADSAWRLPEPASADARDIQKAAAEAAEAFRPAESDGSSVDDSRTENMMTAETTPENVLYVDDDAIFGLPGLLEDMAAGMMLPPPQHFRDDMDFYSDVSLWSY | 211 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 718294 | 718929 | + | CmoCh16G001580.1 | Cmo16g00158 | 399193 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo16g00158 | 211 | CDD | AP2 | 54 | 112 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g00158 | 211 | PRINTS | Ethylene responsive element binding protein signature | 54 | 65 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g00158 | 211 | PRINTS | Ethylene responsive element binding protein signature | 76 | 92 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g00158 | 211 | ProSiteProfiles | AP2/ERF domain profile. | 53 | 110 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g00158 | 211 | SMART | rav1_2 | 53 | 116 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g00158 | 211 | SUPERFAMILY | DNA-binding domain | 53 | 112 | IPR016177 | GO:0003677 | |
Cmo16g00158 | 211 | PANTHER | AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR | 13 | 211 | - | - | |
Cmo16g00158 | 211 | Pfam | AP2 domain | 52 | 102 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g00158 | 211 | Gene3D | AP2/ERF domain | 53 | 111 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo16g00158 | 211 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 13 | 211 | IPR045277 | GO:0003700 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01061 | Cmo-Chr2:6465361 | Cmo16g00158 | Cmo-Chr16:718294 | 4.58E-77 | dispersed | |
Cmo14g00276 | Cmo-Chr14:1249457 | Cmo16g00158 | Cmo-Chr16:718294 | 2.02E-44 | dispersed | |
Cmo16g00158 | Cmo-Chr16:718294 | Cmo12g00206 | Cmo-Chr12:1361052 | 1.05E-36 | dispersed | |
Cmo15g01261 | Cmo-Chr15:8654286 | Cmo16g00158 | Cmo-Chr16:718294 | 1.03E-66 | wgd | |
Cmo16g00158 | Cmo-Chr16:718294 | Cmo02g01523 | Cmo-Chr2:8862933 | 4.70E-38 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11247 | PF00847 | AP2 | 5.30E-16 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo16g00158 | - | K09286 | csv:101220749 | 343.969 |