Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00158 ATGGAATCTTTTTCAACTTTTTATGAAGACTACTTCTCCAGCTCCGAGAGTAGTACTTGCCGGCGGACCATATTTTCCGAGAAGGAGCTTATGTTAGCGGCGAGCAATCCCAAGAAGAGGGCCGGCAGGAAGAAGTTTAAGGAGACAAGGCACCCTGTTTACAGAGGGGTCAGGAGGAGGAACTCCGGCAAGTGGGTCTGTGAAGTGAGAGAGCCTAATAAGAAGTCAAGGATTTGGCTTGGCACTTTTCCGACGGCGGAGATGGCGGCTCGGGCTCACGACGTCGCTGCCATGAAGCTTCGAGGTCGCTCTGCTTGTCTCAATTTTGCAGATTCTGCGTGGCGGCTGCCGGAGCCAGCATCTGCTGACGCCAGGGATATTCAGAAGGCGGCGGCGGAGGCGGCGGAGGCATTCCGGCCGGCCGAATCAGATGGGTCTTCTGTTGATGACTCAAGGACGGAAAATATGATGACGGCGGAGACGACGCCAGAAAACGTGTTGTACGTGGATGATGATGCAATTTTTGGGCTGCCGGGATTGTTGGAGGATATGGCTGCAGGGATGATGTTGCCTCCACCTCAGCATTTTCGTGATGACATGGATTTTTATTCTGACGTGTCATTATGGAGCTACTAA 636 52.83 MESFSTFYEDYFSSSESSTCRRTIFSEKELMLAASNPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAMKLRGRSACLNFADSAWRLPEPASADARDIQKAAAEAAEAFRPAESDGSSVDDSRTENMMTAETTPENVLYVDDDAIFGLPGLLEDMAAGMMLPPPQHFRDDMDFYSDVSLWSY 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 718294 718929 + CmoCh16G001580.1 Cmo16g00158 399193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00158 211 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Cmo16g00158 211 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Cmo16g00158 211 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Cmo16g00158 211 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Cmo16g00158 211 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Cmo16g00158 211 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677
Cmo16g00158 211 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 13 211 - -
Cmo16g00158 211 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Cmo16g00158 211 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Cmo16g00158 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 211 IPR045277 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01061 Cmo-Chr2:6465361 Cmo16g00158 Cmo-Chr16:718294 4.58E-77 dispersed
Cmo14g00276 Cmo-Chr14:1249457 Cmo16g00158 Cmo-Chr16:718294 2.02E-44 dispersed
Cmo16g00158 Cmo-Chr16:718294 Cmo12g00206 Cmo-Chr12:1361052 1.05E-36 dispersed
Cmo15g01261 Cmo-Chr15:8654286 Cmo16g00158 Cmo-Chr16:718294 1.03E-66 wgd
Cmo16g00158 Cmo-Chr16:718294 Cmo02g01523 Cmo-Chr2:8862933 4.70E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11247 PF00847 AP2 5.30E-16 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00158 - K09286 csv:101220749 343.969