Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00172 ATGCCGAGAGCGCGGTGCCGTAGAATAGAGATGCGACGATTAGAAACAGTACCGTCGAAGAAACGTGTGCGGAAGACGGACAGCGACGGTTCTCCGGAGATTTCATCTTCTTCGTCATCGGGGGAGGACGTGAAGACTGTAGAAGCTTCACCGTCGGTACCTCAGCCTGTGTTCGGGATGTTGTCGGTGTCCGGAAGGTCACGTGAGATGGAGGATGCAGTATCGACGAGCTTATGCCTTCTAGGTCCAGGAAATTTCCGGCGGCAACCGGTGCATTTCTTCGCCGTCTACGATGGACATGGAGGCCCTCACGTGGCAGCGCTATGTAGGGAGAAGATGCACGTGTTAGTACAAGAGGAATTGGCGCGCGTGGTGAGTGGCGGCGGAGGAAGCAGTGCGGCGGAGGAGGCTAAGGTGGAGGAGGAGGCGACTTGGAAAAGAGTGATGCGGAGGAGCTTTGAGAGAATGGACGAAGTGGCACTCAGTACTTGTGCCTGTGGAAGCATCGGAGGCCAGTGTAGGTGCCATCCAATGGAGGTGGCTCTTGGCGGCTCCACCGCCGTCGTTGCCGTGCTCACCCCGGATCACATAATGGTCGCCAACTGCGGTGACTCACGCGCCGTCCTCTGCCGAGGAGGAAGGGCCATTCCGCTTTCCAATGATCACAAGCCTGATAGAAATGATGAACTAGCAAGAATCGAAGCTGCTGGAGGACGGGTGATTTTCATAAATGGAGCTCGGGTTGAAGGAATCCTGGCAATGTCCCGTGCAATAGAATCATGTCATGTTGGCGAGTGTGTTCCTGCTGGGTGCTCACTGCTCACTGCTCACTCTACTTGA 840 55.83 MPRARCRRIEMRRLETVPSKKRVRKTDSDGSPEISSSSSSGEDVKTVEASPSVPQPVFGMLSVSGRSREMEDAVSTSLCLLGPGNFRRQPVHFFAVYDGHGGPHVAALCREKMHVLVQEELARVVSGGGGSSAAEEAKVEEEATWKRVMRRSFERMDEVALSTCACGSIGGQCRCHPMEVALGGSTAVVAVLTPDHIMVANCGDSRAVLCRGGRAIPLSNDHKPDRNDELARIEAAGGRVIFINGARVEGILAMSRAIESCHVGECVPAGCSLLTAHST 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 778718 784887 - CmoCh16G001720.1 Cmo16g00172 399207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00172 279 ProSiteProfiles PPM-type phosphatase domain profile. 57 279 IPR001932 -
Cmo16g00172 279 Pfam Protein phosphatase 2C 61 258 IPR001932 -
Cmo16g00172 279 MobiDBLite consensus disorder prediction 30 46 - -
Cmo16g00172 279 CDD PP2Cc 57 258 IPR001932 -
Cmo16g00172 279 Gene3D - 50 271 IPR036457 -
Cmo16g00172 279 MobiDBLite consensus disorder prediction 1 57 - -
Cmo16g00172 279 ProSitePatterns PPM-type phosphatase domain signature. 93 101 IPR000222 GO:0043169
Cmo16g00172 279 SUPERFAMILY PP2C-like 52 258 IPR036457 -
Cmo16g00172 279 SMART PP2C_4 47 276 IPR001932 -
Cmo16g00172 279 PANTHER PROTEIN PHOSPHATASE 2C 75-RELATED 25 259 - -
Cmo16g00172 279 PANTHER ALPHABET, ISOFORM E-RELATED 25 259 - -
Cmo16g00172 279 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo16g00172 Cmo18g01222 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00172 Cmo-Chr16:778718 Cmo01g00655 Cmo-Chr1:3349903 4.40E-56 dispersed
Cmo16g00172 Cmo-Chr16:778718 Cmo18g01222 Cmo-Chr18:12126621 1.59E-137 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00172 K14497 - csv:101206634 395.586