Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo16g00232 | ATGCTCCTCTCTTTTCCAAAGCCATCAAGCTCTTCCCTTTTGGTTTCTAAGCTTCCAAGAACCACACTTTTCCATCCAAACAAGATGACCCAGTTCTTGAATCTTGCTCTTGGAGTGTTTTTTGTTCTGGGTTTGGCTGTTCTTCTTCTCATCTTCTTGAACAGAAGGGGAAAGGGGAAGGATGGCGATGGATTCAATGACTTGGAGAGGAACCAGCAGAGTGCGAAAGGGGCGGAGGAGAGTGAAGACTTGCTGACATTTCAAGGTGGGCAGGACCTTACCATTTTGGATATCTTGGAAGCTCCTGGGGAAGTCATTGGCAAAGCCAACCATGGAACTCTGTATAAGGCTTACTTGCAAGGTAGCAGCACGGTGCGGCTGCTTAGGTTTCTGAGGCCTGTTTGCACTGCTGGGCATGATGATTTTGTCAGTGAAATAGAGTTTTTGGGTTCCATAAGACACCCAAATTTGGTGCCTCTTTTGGGATTCTATTCAGGTCCAAGAACAGAGAAGCTTCTCATTCATCCATTCTACAGGCGAGGAAATCTAGCTCAGTTCATCAGAGGATGGAATCTTGTTAAACTAACACATGAAGCTGAAACAAAGTGTGCTAATTTGGCAGATGGGAATGGTGACTCGCACCGATGGGGAGTAATAAACAAGATCTCAATCGGTATAGCGAAAGGGTTGGATCATCTCCACACTGGCTTGCAAAAGCCAACAATCCATGGGAATCTACAGTCGAAAAATGTTCTTTTGGATCGGAACTATGAACCGTATGTCTCGGATTTCGGTCTACATCTACTGTTGAATTCCTCTTCTGCTCAAGAGGTGCTTGAAGGTTTAGCAGCTAATGGCTACAAAGCTCCTGAGGTGATCAAGATGAAGGATGCAACAGAGGAGACTGATGTTTATAGTTATGGGGTGATCTTACTCGAGCTACTTTCGGGGAAGGAACCGGTTAACGAAAAGCCAGCTTTCGATGAGGATTTTTACTTGCCTAACTTTATGAGAAATGCAGTTCTTGGACATAGAATTGCAGATCTGTTCCATCCAGAAATACTTCTATACAGCAGCATTGATGGAAACAATGTTACTGAAGAAAAGATTCTCAAATTCTTTCAGCTTGCAATGGCGTGTTGTTCGCCGTCTCCAGCTCTTAGGCCTAGTATGAAGCAAGTGCTTCGAAAGCTCAATGAAATCGGA | 1206 | 44.36 | MLLSFPKPSSSSLLVSKLPRTTLFHPNKMTQFLNLALGVFFVLGLAVLLLIFLNRRGKGKDGDGFNDLERNQQSAKGAEESEDLLTFQGGQDLTILDILEAPGEVIGKANHGTLYKAYLQGSSTVRLLRFLRPVCTAGHDDFVSEIEFLGSIRHPNLVPLLGFYSGPRTEKLLIHPFYRRGNLAQFIRGWNLVKLTHEAETKCANLADGNGDSHRWGVINKISIGIAKGLDHLHTGLQKPTIHGNLQSKNVLLDRNYEPYVSDFGLHLLLNSSSAQEVLEGLAANGYKAPEVIKMKDATEETDVYSYGVILLELLSGKEPVNEKPAFDEDFYLPNFMRNAVLGHRIADLFHPEILLYSSIDGNNVTEEKILKFFQLAMACCSPSPALRPSMKQVLRKLNEIG | 402 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 1018435 | 1019774 | - | CmoCh16G002320.1 | Cmo16g00232 | 399267 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo16g00232 | 402 | Gene3D | Transferase(Phosphotransferase) domain 1 | 202 | 401 | - | - | |
Cmo16g00232 | 402 | Pfam | Protein tyrosine and serine/threonine kinase | 104 | 397 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo16g00232 | 402 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED | 32 | 402 | - | - | |
Cmo16g00232 | 402 | ProSiteProfiles | Protein kinase domain profile. | 100 | 401 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo16g00232 | 402 | Gene3D | Phosphorylase Kinase; domain 1 | 97 | 177 | - | - | |
Cmo16g00232 | 402 | SUPERFAMILY | Protein kinase-like (PK-like) | 103 | 398 | IPR011009 | - | |
Cmo16g00232 | 402 | PANTHER | PROTEIN KINASE SUPERFAMILY PROTEIN | 32 | 402 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo15g01417 | Cmo-Chr15:9662717 | Cmo16g00232 | Cmo-Chr16:1018435 | 8.95E-96 | dispersed | |
Cmo16g00232 | Cmo-Chr16:1018435 | Cmo17g01218 | Cmo-Chr17:9719525 | 9.68E-66 | dispersed | |
Cmo16g00232 | Cmo-Chr16:1018435 | Cmo02g00984 | Cmo-Chr2:6059094 | 1.96E-97 | wgd | |
Cmo16g00232 | Cmo-Chr16:1018435 | Cmo04g00374 | Cmo-Chr4:1819841 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74952 | PF07714 | PK_Tyr_Ser-Thr | 6.90E-30 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo16g00232 | - | - | cmax:111483478 | 697.197 |