Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00232 ATGCTCCTCTCTTTTCCAAAGCCATCAAGCTCTTCCCTTTTGGTTTCTAAGCTTCCAAGAACCACACTTTTCCATCCAAACAAGATGACCCAGTTCTTGAATCTTGCTCTTGGAGTGTTTTTTGTTCTGGGTTTGGCTGTTCTTCTTCTCATCTTCTTGAACAGAAGGGGAAAGGGGAAGGATGGCGATGGATTCAATGACTTGGAGAGGAACCAGCAGAGTGCGAAAGGGGCGGAGGAGAGTGAAGACTTGCTGACATTTCAAGGTGGGCAGGACCTTACCATTTTGGATATCTTGGAAGCTCCTGGGGAAGTCATTGGCAAAGCCAACCATGGAACTCTGTATAAGGCTTACTTGCAAGGTAGCAGCACGGTGCGGCTGCTTAGGTTTCTGAGGCCTGTTTGCACTGCTGGGCATGATGATTTTGTCAGTGAAATAGAGTTTTTGGGTTCCATAAGACACCCAAATTTGGTGCCTCTTTTGGGATTCTATTCAGGTCCAAGAACAGAGAAGCTTCTCATTCATCCATTCTACAGGCGAGGAAATCTAGCTCAGTTCATCAGAGGATGGAATCTTGTTAAACTAACACATGAAGCTGAAACAAAGTGTGCTAATTTGGCAGATGGGAATGGTGACTCGCACCGATGGGGAGTAATAAACAAGATCTCAATCGGTATAGCGAAAGGGTTGGATCATCTCCACACTGGCTTGCAAAAGCCAACAATCCATGGGAATCTACAGTCGAAAAATGTTCTTTTGGATCGGAACTATGAACCGTATGTCTCGGATTTCGGTCTACATCTACTGTTGAATTCCTCTTCTGCTCAAGAGGTGCTTGAAGGTTTAGCAGCTAATGGCTACAAAGCTCCTGAGGTGATCAAGATGAAGGATGCAACAGAGGAGACTGATGTTTATAGTTATGGGGTGATCTTACTCGAGCTACTTTCGGGGAAGGAACCGGTTAACGAAAAGCCAGCTTTCGATGAGGATTTTTACTTGCCTAACTTTATGAGAAATGCAGTTCTTGGACATAGAATTGCAGATCTGTTCCATCCAGAAATACTTCTATACAGCAGCATTGATGGAAACAATGTTACTGAAGAAAAGATTCTCAAATTCTTTCAGCTTGCAATGGCGTGTTGTTCGCCGTCTCCAGCTCTTAGGCCTAGTATGAAGCAAGTGCTTCGAAAGCTCAATGAAATCGGA 1206 44.36 MLLSFPKPSSSSLLVSKLPRTTLFHPNKMTQFLNLALGVFFVLGLAVLLLIFLNRRGKGKDGDGFNDLERNQQSAKGAEESEDLLTFQGGQDLTILDILEAPGEVIGKANHGTLYKAYLQGSSTVRLLRFLRPVCTAGHDDFVSEIEFLGSIRHPNLVPLLGFYSGPRTEKLLIHPFYRRGNLAQFIRGWNLVKLTHEAETKCANLADGNGDSHRWGVINKISIGIAKGLDHLHTGLQKPTIHGNLQSKNVLLDRNYEPYVSDFGLHLLLNSSSAQEVLEGLAANGYKAPEVIKMKDATEETDVYSYGVILLELLSGKEPVNEKPAFDEDFYLPNFMRNAVLGHRIADLFHPEILLYSSIDGNNVTEEKILKFFQLAMACCSPSPALRPSMKQVLRKLNEIG 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1018435 1019774 - CmoCh16G002320.1 Cmo16g00232 399267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00232 402 Gene3D Transferase(Phosphotransferase) domain 1 202 401 - -
Cmo16g00232 402 Pfam Protein tyrosine and serine/threonine kinase 104 397 IPR001245 GO:0004672|GO:0006468
Cmo16g00232 402 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 32 402 - -
Cmo16g00232 402 ProSiteProfiles Protein kinase domain profile. 100 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00232 402 Gene3D Phosphorylase Kinase; domain 1 97 177 - -
Cmo16g00232 402 SUPERFAMILY Protein kinase-like (PK-like) 103 398 IPR011009 -
Cmo16g00232 402 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 32 402 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01417 Cmo-Chr15:9662717 Cmo16g00232 Cmo-Chr16:1018435 8.95E-96 dispersed
Cmo16g00232 Cmo-Chr16:1018435 Cmo17g01218 Cmo-Chr17:9719525 9.68E-66 dispersed
Cmo16g00232 Cmo-Chr16:1018435 Cmo02g00984 Cmo-Chr2:6059094 1.96E-97 wgd
Cmo16g00232 Cmo-Chr16:1018435 Cmo04g00374 Cmo-Chr4:1819841 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74952 PF07714 PK_Tyr_Ser-Thr 6.90E-30 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00232 - - cmax:111483478 697.197