Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo16g00237 | ATGGAGCTCCAAAAACCCGATCCATTTGGCGACCCAAATTTGGTGCACAACAAAGCCCCATTAACCTACGCCGATCTCTTCTCTTCTTTAACCGATCAATGGGGCGATCTTCCCCTCAAACTCGACGATTCTCACGACATGGTCATCTTCAATTCCCTTCACGACGCCGTCGTTTTCGTCCTTTCTCCTCTCCATTCCATCCATCCGCCGGACGCCTCTTCCGCCCTCCACCTCGACCCCTTTCCGACCACCACTGCGCCCGCCGCCCAGATGGATGACAAGAGTAAGCGTTACCGTGGAGTACGACGGCGGCCCTGGGGGAAGTACGCTTCCGAGATTCGGGATCCGGCTAAGAGCGGTGCACGTGTGTGGCTTGGCACGTACGAGACGGCTGAGGATGCTGCTTTAGCTTATGATCGAGCCGCCTTCAGAATGCGCGGCTCCAAGGCTCTTCTTAACTTCCCTAATCGCATTGGCTCTGACGACCCGCCACCGCTACGAGTCTCGGCTCGACGTCGGGAGCATGATATCCTTGTGCCTTTGGCTGACGGGTCGGCTAAGAGAAGAAAAGGCGCAGCTAATAAAAAAGCCGAACCGGAGTCGAGTAAGTTCCAGGTGGGGCCCTCCCAGATAGCAGCATTGCCAGTTGGCGAGCAGTTATTGGTTAGCTAG | 672 | 56.1 | MELQKPDPFGDPNLVHNKAPLTYADLFSSLTDQWGDLPLKLDDSHDMVIFNSLHDAVVFVLSPLHSIHPPDASSALHLDPFPTTTAPAAQMDDKSKRYRGVRRRPWGKYASEIRDPAKSGARVWLGTYETAEDAALAYDRAAFRMRGSKALLNFPNRIGSDDPPPLRVSARRREHDILVPLADGSAKRRKGAANKKAEPESSKFQVGPSQIAALPVGEQLLVS | 223 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 1045300 | 1045971 | - | CmoCh16G002370.1 | Cmo16g00237 | 399272 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo16g00237 | 223 | ProSiteProfiles | AP2/ERF domain profile. | 97 | 155 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g00237 | 223 | SUPERFAMILY | DNA-binding domain | 97 | 156 | IPR016177 | GO:0003677 | |
Cmo16g00237 | 223 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 | 31 | 174 | - | - | |
Cmo16g00237 | 223 | Gene3D | AP2/ERF domain | 96 | 157 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo16g00237 | 223 | PANTHER | DNA-BINDING DOMAIN | 31 | 174 | IPR044808 | GO:0003700|GO:0009873 | |
Cmo16g00237 | 223 | MobiDBLite | consensus disorder prediction | 182 | 197 | - | - | |
Cmo16g00237 | 223 | Pfam | AP2 domain | 97 | 147 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g00237 | 223 | CDD | AP2 | 96 | 156 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g00237 | 223 | MobiDBLite | consensus disorder prediction | 182 | 209 | - | - | |
Cmo16g00237 | 223 | PRINTS | Ethylene responsive element binding protein signature | 98 | 109 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g00237 | 223 | PRINTS | Ethylene responsive element binding protein signature | 121 | 137 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g00237 | 223 | SMART | rav1_2 | 97 | 161 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g00237 | 223 | MobiDBLite | consensus disorder prediction | 78 | 97 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00991 | Cmo16g00237 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo07g00207 | Cmo-Chr7:1043426 | Cmo16g00237 | Cmo-Chr16:1045300 | 2.91E-34 | dispersed | |
Cmo16g00237 | Cmo-Chr16:1045300 | Cmo16g01167 | Cmo-Chr16:8316409 | 2.16E-50 | dispersed | |
Cmo06g00964 | Cmo-Chr6:7555782 | Cmo16g00237 | Cmo-Chr16:1045300 | 1.88E-32 | transposed | |
Cmo16g00237 | Cmo-Chr16:1045300 | Cmo02g00991 | Cmo-Chr2:6090085 | 3.48E-31 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11253 | PF00847 | AP2 | 1.40E-13 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo16g00237 | K09286 | - | csin:114298263 | 200.29 |