Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00237 ATGGAGCTCCAAAAACCCGATCCATTTGGCGACCCAAATTTGGTGCACAACAAAGCCCCATTAACCTACGCCGATCTCTTCTCTTCTTTAACCGATCAATGGGGCGATCTTCCCCTCAAACTCGACGATTCTCACGACATGGTCATCTTCAATTCCCTTCACGACGCCGTCGTTTTCGTCCTTTCTCCTCTCCATTCCATCCATCCGCCGGACGCCTCTTCCGCCCTCCACCTCGACCCCTTTCCGACCACCACTGCGCCCGCCGCCCAGATGGATGACAAGAGTAAGCGTTACCGTGGAGTACGACGGCGGCCCTGGGGGAAGTACGCTTCCGAGATTCGGGATCCGGCTAAGAGCGGTGCACGTGTGTGGCTTGGCACGTACGAGACGGCTGAGGATGCTGCTTTAGCTTATGATCGAGCCGCCTTCAGAATGCGCGGCTCCAAGGCTCTTCTTAACTTCCCTAATCGCATTGGCTCTGACGACCCGCCACCGCTACGAGTCTCGGCTCGACGTCGGGAGCATGATATCCTTGTGCCTTTGGCTGACGGGTCGGCTAAGAGAAGAAAAGGCGCAGCTAATAAAAAAGCCGAACCGGAGTCGAGTAAGTTCCAGGTGGGGCCCTCCCAGATAGCAGCATTGCCAGTTGGCGAGCAGTTATTGGTTAGCTAG 672 56.1 MELQKPDPFGDPNLVHNKAPLTYADLFSSLTDQWGDLPLKLDDSHDMVIFNSLHDAVVFVLSPLHSIHPPDASSALHLDPFPTTTAPAAQMDDKSKRYRGVRRRPWGKYASEIRDPAKSGARVWLGTYETAEDAALAYDRAAFRMRGSKALLNFPNRIGSDDPPPLRVSARRREHDILVPLADGSAKRRKGAANKKAEPESSKFQVGPSQIAALPVGEQLLVS 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1045300 1045971 - CmoCh16G002370.1 Cmo16g00237 399272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00237 223 ProSiteProfiles AP2/ERF domain profile. 97 155 IPR001471 GO:0003700|GO:0006355
Cmo16g00237 223 SUPERFAMILY DNA-binding domain 97 156 IPR016177 GO:0003677
Cmo16g00237 223 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 31 174 - -
Cmo16g00237 223 Gene3D AP2/ERF domain 96 157 IPR036955 GO:0003700|GO:0006355
Cmo16g00237 223 PANTHER DNA-BINDING DOMAIN 31 174 IPR044808 GO:0003700|GO:0009873
Cmo16g00237 223 MobiDBLite consensus disorder prediction 182 197 - -
Cmo16g00237 223 Pfam AP2 domain 97 147 IPR001471 GO:0003700|GO:0006355
Cmo16g00237 223 CDD AP2 96 156 IPR001471 GO:0003700|GO:0006355
Cmo16g00237 223 MobiDBLite consensus disorder prediction 182 209 - -
Cmo16g00237 223 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700|GO:0006355
Cmo16g00237 223 PRINTS Ethylene responsive element binding protein signature 121 137 IPR001471 GO:0003700|GO:0006355
Cmo16g00237 223 SMART rav1_2 97 161 IPR001471 GO:0003700|GO:0006355
Cmo16g00237 223 MobiDBLite consensus disorder prediction 78 97 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00991 Cmo16g00237 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00207 Cmo-Chr7:1043426 Cmo16g00237 Cmo-Chr16:1045300 2.91E-34 dispersed
Cmo16g00237 Cmo-Chr16:1045300 Cmo16g01167 Cmo-Chr16:8316409 2.16E-50 dispersed
Cmo06g00964 Cmo-Chr6:7555782 Cmo16g00237 Cmo-Chr16:1045300 1.88E-32 transposed
Cmo16g00237 Cmo-Chr16:1045300 Cmo02g00991 Cmo-Chr2:6090085 3.48E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11253 PF00847 AP2 1.40E-13 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00237 K09286 - csin:114298263 200.29