Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00239 ATGTTACAAGGGTTTGTTTTCGGCATCAATGACGTGTACGGTCATGAATTCACCGCCGTGGCGCTGCCGGAATTCGCTTACAGGAACACTCGCTTAACGCCACAAACCGATGACACGGCGCTGTTCAACTCCGACGAGTTTCGGATGTACGCTTTCAAGATCCAACGGTGTCCGAAATCCCGCAGCCATGATTGGACGGAATGTCCTTATGCCCACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTTAACTACTCTGCTGTGGCTTGCCCTGCCTTTCGGACGGGCAGCTGCCCAAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTTCTGGCTCCACCCGACCCGGTACCGAACCCGGGCCTGTAATGCGGGCAGGTTTTGCCAACGCAAAGTTTGCTTTTTTGCTCACTCGCCGGAGGAGCTCCGCCCTGAGACCAAACTCAAGCTTCATTTTGATGCTCCCGTGGCGCGTGCAGCGCTGGCCGCACTTGAATATCCCGTGGAGAGAAAGAACGACGGCGTTTCGGAAATTCCGGTGAAGGAGATCAGCGACGGACTGGGAAATGAACGGAGCTCGGAGTTGGAGGCGTCAGAATTCGAGTTGCCGCACATTGAATGGATATCGGAATTGTTGCAGTAA 657 55.1 MLQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHFDAPVARAALAALEYPVERKNDGVSEIPVKEISDGLGNERSSELEASEFELPHIEWISELLQ 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1052957 1053613 - CmoCh16G002390.1 Cmo16g00239 399274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00239 218 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 54 32 164 - -
Cmo16g00239 218 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 111 IPR000571 GO:0046872
Cmo16g00239 218 PANTHER UNKEMPT FAMILY MEMBER 32 164 IPR045234 -
Cmo16g00239 218 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
Cmo16g00239 218 SUPERFAMILY CCCH zinc finger 85 116 IPR036855 GO:0046872
Cmo16g00239 218 Gene3D - 83 154 - -
Cmo16g00239 218 SMART c3hfinal6 86 112 IPR000571 GO:0046872
Cmo16g00239 218 SMART c3hfinal6 121 144 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00239 Cmo-Chr16:1052957 Cmo19g01036 Cmo-Chr19:9049904 1.55E-53 dispersed
Cmo16g00239 Cmo-Chr16:1052957 Cmo06g00067 Cmo-Chr6:411596 2.48E-51 transposed
Cmo16g00239 Cmo-Chr16:1052957 Cmo04g00148 Cmo-Chr4:775143 1.30E-51 transposed
Cmo16g00239 Cmo-Chr16:1052957 Cmo04g01178 Cmo-Chr4:6019943 2.05E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11254 PF00642 zf-CCCH 5.00E-06 CL0537 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00239 - - mcha:111011570 285.034