Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00250 ATGGATCGCAATTTCAACTACGACGAGCATGACCACGAAGTTTATGGAGGCGATATCCCTGACGACGCCGAGATGGATGCCGACCTCGACATGTCCTCTGGTAGGGCCGACGAAGAAGATTACGACGTCGAACCCAGTAGCGCCAACTCGAAGGACTTGGAGGACATGAAGAGGAGGCTTAAGGAGATCGAAGAGGAGGCCGGTGCCCTTCGTGAAATGCAGGCCAAGGTCGAGAAGGAGATGGGCGCTGTTCAAGATTCATCCAGTACCTCTGCAACGCAGGCTGAAAAGGAGGAAGCGGATTCTCGATCTGTATATGTTGGTAATGTTGACTATGCATGCACTCCTGAAGAGGTCCAACAGCATTTTCAATCATGTGGAACAGTTAATAGAGTGACAATTTTGACTGACAAATTTGGCCATCCCAAGGGATTTGCTTATGTCGAGTTCGTGGAGGTTGATGCTATCCAGAATGCTTTGCTGTTGAACGAGTCGGAGTTGCATGGTCGTCAACTAAAGGTCTCTGCTAAAAGGACAAATGTGCCTGGCATGAAGCAATTCAGAGGAAGGCGACCAAACTCTTTTGGCTTTCGAGGTCGTCGGCCTTTCCCTTCCGCACCTTTTCCTCCTTCGTATGGTTATGGGCCTACGAATGTCTACAAAGATCCGGATGACGGGCGGCAGCGGTTCTTGCTCGAATTGGAATTTGTTCAATGTCTTGCCAATCCAACCTACATTCATTATTTGGCTCAGAATCGTTACCTTGAGGACGAAGCTTTTATTGGTTACTTGAAGTACCTTCAATATTGGCAACAACCGGAGTATATTAAGTACATAATGTATCCTCATTGTCTTTTTTTCCTTGAACTTCTACAAAATGCAAACTTCCGAAATGCAATGGCTCATCCTGCCAACAAGGAACTGACACACAGACAGCAATTTTACTTCTGGAAGAACTATCGGAACAATCGTTTGAAACACATTTTACCTCGACCCCTACTCGAACCTGCAGCTCAACCACCTCCGGTTTCTGGTCCTCCCCAGGCAGCTGTGTCGGCCCCAGCCTCTGCTATGGCAGCTTCTCCTGCTGGTACCCCCCTTTCTCCAATGCAGTATGGTGTTCCCCCTGGTTCTGGGATTTCAAAGAACGATATGAAGAATGCAGGAATCGATCGACGAAAGAGAAAACACGAAAGAAATTTTATCAGAGAAGGCCAAAATCAGAGCCAAAACAAGCGGCCACTAAACATAAAAGGAAGGCCAAAAGAGCTTAGAAATCTCAAAGACATGGCTTCAATTGCTATCTCTGCCTCATTTCCAAGATCATGTACTTCAAATCATGTCTCCAACAAGCAACAACGTCGTCAAGCCCGACCTACCTATTCCTCCATGACGAAAAACCCGACCCCAGAGCTAATCAAAACTCCCTACGTTGGCGACCGAGATGCCTTAGACGCTCCCAAACGTCATGGAAACGTTGCATCAGCTACGGACAAGCTAGAGGAAGATACTGACGATATGAACCATGGCCAAACGTTCACAGATGAGAGATGGAAAAATGGGACATGGGATCTCAATATGTTTGTGAAGAATGGCAAGATGGATTGGGAAGGTGTCATCGTCGCAGAAGCAAAGAGGAGGAAGTTTCTTGAATTGTATCCAGAAACAGCTACAAATCACGAACCAGTGCTCTTTAGAAGCTCCATTATACCTTGGTGGGCATGGCTCACCAAATCCTACCTCCCACAAGCCGAACTACTTAACGGTAGGGCAGCAATGATAGGGTTCTTCATGGCCTATCTAGTGGATGCATTAACAGGAATTGGAATAGTTGGGCAAAGTGGGAATTTCATAAGCAAAGCAGCCCTTTTTGTAACAGTCATTGCTTCCTCCGCCGTACACGGCCGGAAACTGCTCAACTCTCCAGACATGTATTGGGGATCGCCCAATGGAGGTGGGAATCCCACTGGGGGCTATGGCTCTGCTCATGGTCCTAATTGGGACTATAATTGGGGCTGGGGTTCGAGCCCTGGGAGTGGTTGGGGTTACGGGTCGGGTTCTGGTCGCTCCCCGACTGGGTTCGGGAAAGGTTATGGATATGGATTTGGTTCCGGGTCGGGTTCGGGATCTGGATATGGGTATGGAAGCGGAGGTGGTGGGGCTCATGGTGGTGGTTATGGCTCCGGAAGTGGCTACGGTAACTCTGGCGACAGTGGCGATGGTGGCGGGTACGGTGGTTCGAGTGGCGGCGGATATGGCAATTCGAGTGGCGGCGAGTATCCTCCGTCGGCCGTTACGAAGGACAAGAGCAGACATGGGTAG 2322 49.05 MDRNFNYDEHDHEVYGGDIPDDAEMDADLDMSSGRADEEDYDVEPSSANSKDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEADSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRTNVPGMKQFRGRRPNSFGFRGRRPFPSAPFPPSYGYGPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQQPEYIKYIMYPHCLFFLELLQNANFRNAMAHPANKELTHRQQFYFWKNYRNNRLKHILPRPLLEPAAQPPPVSGPPQAAVSAPASAMAASPAGTPLSPMQYGVPPGSGISKNDMKNAGIDRRKRKHERNFIREGQNQSQNKRPLNIKGRPKELRNLKDMASIAISASFPRSCTSNHVSNKQQRRQARPTYSSMTKNPTPELIKTPYVGDRDALDAPKRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKFLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALTGIGIVGQSGNFISKAALFVTVIASSAVHGRKLLNSPDMYWGSPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGYGFGSGSGSGSGYGYGSGGGGAHGGGYGSGSGYGNSGDSGDGGGYGGSSGGGYGNSSGGEYPPSAVTKDKSRHG 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1096687 1110275 - CmoCh16G002500.1 Cmo16g00250 399285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00250 773 Pfam SOH1 228 320 IPR008831 GO:0003712|GO:0006355|GO:0016592
Cmo16g00250 773 MobiDBLite consensus disorder prediction 79 102 - -
Cmo16g00250 773 SMART rrm1_1 104 175 IPR000504 GO:0003723
Cmo16g00250 773 MobiDBLite consensus disorder prediction 442 470 - -
Cmo16g00250 773 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 7 224 - -
Cmo16g00250 773 MobiDBLite consensus disorder prediction 336 418 - -
Cmo16g00250 773 SUPERFAMILY Chlorophyll a-b binding protein 564 618 - -
Cmo16g00250 773 SUPERFAMILY RNA-binding domain, RBD 92 203 IPR035979 GO:0003676
Cmo16g00250 773 CDD RRM_II_PABPs 104 175 - -
Cmo16g00250 773 MobiDBLite consensus disorder prediction 442 513 - -
Cmo16g00250 773 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 216 317 IPR038089 -
Cmo16g00250 773 Coils Coil 46 80 - -
Cmo16g00250 773 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 179 IPR000504 GO:0003723
Cmo16g00250 773 MobiDBLite consensus disorder prediction 1 19 - -
Cmo16g00250 773 MobiDBLite consensus disorder prediction 725 773 - -
Cmo16g00250 773 MobiDBLite consensus disorder prediction 1 58 - -
Cmo16g00250 773 MobiDBLite consensus disorder prediction 386 403 - -
Cmo16g00250 773 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 7 224 - -
Cmo16g00250 773 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 173 IPR000504 GO:0003723
Cmo16g00250 773 Gene3D - 43 176 IPR012677 -
Cmo16g00250 773 MobiDBLite consensus disorder prediction 28 58 - -
Cmo16g00250 773 MobiDBLite consensus disorder prediction 481 513 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00250 K14396 PABPN1, PABP2; polyadenylate-binding protein 2 - csv:101222578 362.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00837 Cmo-Chr6:4609847 Cmo16g00250 Cmo-Chr16:1096687 3.49E-45 dispersed
Cmo16g00250 Cmo-Chr16:1096687 Cmo16g00757 Cmo-Chr16:3792757 6.11E-91 dispersed
Cmo04g00396 Cmo-Chr4:1948216 Cmo16g00250 Cmo-Chr16:1096687 2.25E-125 transposed
Cmo16g00250 Cmo-Chr16:1096687 Cmo04g00395 Cmo-Chr4:1944236 7.99E-110 wgd
Cmo16g00250 Cmo-Chr16:1096687 Cmo04g00433 Cmo-Chr4:2148984 3.24E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1018 . . . . . . . Bma12g00369 . . . . . . . . . . . . . . . . Cla10g00890 Cam10g0915 . Cco10g0911 Clacu10g0942 Cmu10g1729 Cre10g1101 . . . . . . . . . . . . . . . . . . Cmo16g00250 . . . . Cpe14g00191 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000374 6 8 4 4 4 3 7 3 3 4 3 3 6 4 4 6 3 6 5 3 4 3 4 3 4 2 4 8 5 1 127
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11256 PF05669 Med31 6.20E-34 No_clan Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00250 Cmo_Chr16 FPKM 14.713683 15.708433 22.159948 21.848246 11.297658 9.392924 12.680444 23.345425 23.652746 25.551434