Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00251 ATGATCCTGATCAACTGTTCCCACTGCCGGACGCCGCTGCAGCTCCCGCCAGGCGCTACCTCTGTCCGATGCGCCATCTGCCGCGCAGTCACTGTCGTAGCCGACCCCCGAGGTTTTCCGCCGCCGCCGCCGCCGCCGCGTTACTCTCCCGGCTACAGTAACCCCTTTCCGTCACCGACGCAGAGTTACTATCCTGGCCATCACTACCCCTCTCCGGAGCCGCCGATGTACCCTGCCGGCCGCAGCCCCAAACGGGCGGTGATTTGCGGGATTTCGTACAAAAATACCACGCACGAACTTCAGGGCTGTATTAATGATGCTAAATGTATGAAGTATTTGCTGATCAACCGCTTTAAATTCCCCGATTCCTCCATTCTCGTGCTCACTGATGAAGAAACTGACATTTATAAGCGTCCAACAAAGCAAAACATCAGAATGGCACTGCATTGGCTTGTGCAAGGCGTTCAAGCAGGGGACTCTTTGGTGTTCCATTTCTCTGGCCATGGTTTGCAGCAGAAGAACCTCACCGGTGACGAGATCGATGGCTTCGATGAAACGCTCTGCCCGTTGGATTTTGAGACCGCGGGAATGATCGTCGATGACGAGATCAATGCAACCATAGTTAGGCCTCTCCCTTACGGTGCTAAGCTCCATGCCATCGTAGATTCATGCCATAGTGGGACTATGTTAGACTTGCCATTCCTATGTCGGATGGACAGGAATGGAAGCTACAGATGGGAGGATCATAGGCCTCCATCAGGTGTATACAAAGGAACAAATGGGGGAGAAGTGATATCCTTCAGTGGTTGTGATGATAACCAAACTGCTGCAGACACACAAGCTATGTCAAAGGTTACTACCACTGGGGCCATGACATTTTCTTTCATCAAAGCCATTGAGAGTGGACAAGCAACTACGTACGGTAATATGTTAAATTCGATGAGGTCCACCATTCGAAACACCGACGTTAATTCTGGAAGTGATATCGTTACAAGCCTTATCACCATGCTTTTATCGGGTGGGAGTTTATCAGGCAGACTCAAACAGGAGCCCCAGTTAACTGCCCATTCAACCTTCGATGTGTACAGCAAGCCATTCTCGCTCTAA 1107 50.95 MILINCSHCRTPLQLPPGATSVRCAICRAVTVVADPRGFPPPPPPPRYSPGYSNPFPSPTQSYYPGHHYPSPEPPMYPAGRSPKRAVICGISYKNTTHELQGCINDAKCMKYLLINRFKFPDSSILVLTDEETDIYKRPTKQNIRMALHWLVQGVQAGDSLVFHFSGHGLQQKNLTGDEIDGFDETLCPLDFETAGMIVDDEINATIVRPLPYGAKLHAIVDSCHSGTMLDLPFLCRMDRNGSYRWEDHRPPSGVYKGTNGGEVISFSGCDDNQTAADTQAMSKVTTTGAMTFSFIKAIESGQATTYGNMLNSMRSTIRNTDVNSGSDIVTSLITMLLSGGSLSGRLKQEPQLTAHSTFDVYSKPFSL 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1112133 1114876 + CmoCh16G002510.1 Cmo16g00251 399286

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00251 368 Gene3D - 59 368 - -
Cmo16g00251 368 SUPERFAMILY Caspase-like 68 187 IPR029030 -
Cmo16g00251 368 PANTHER METACASPASE 2-RELATED 2 368 - -
Cmo16g00251 368 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 3 33 IPR005735 -
Cmo16g00251 368 Pfam LSD1 zinc finger 6 30 IPR005735 -
Cmo16g00251 368 Pfam Caspase domain 84 361 - -
Cmo16g00251 368 PANTHER METACASPASE-4 2 368 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00251 K22684 MCA1; metacaspase-1 [EC:3.4.22.-] - csv:101212654 628.246
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01481 Cmo16g00251 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00142 Cmo-Chr2:705102 Cmo16g00251 Cmo-Chr16:1112133 2.05E-28 dispersed
Cmo14g01982 Cmo-Chr14:14585984 Cmo16g00251 Cmo-Chr16:1112133 1.28E-178 dispersed
Cmo16g00251 Cmo-Chr16:1112133 Cmo19g00271 Cmo-Chr19:1976344 1.58E-85 dispersed
Cmo16g00251 Cmo-Chr16:1112133 Cmo06g01223 Cmo-Chr6:9283718 3.45E-175 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1005 . . . . . . . . . Cmo11g01481 . . . . . Cpe04g00376 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo16g00251 . . Car11g01184 . Cpe14g00192 . . . . . . . . . . . . . . . . . . .
Vvi16g255 . . . . . . . . Cmo16g00251 . . . . . . . Cpe14g00192 Bhi01g02530 Tan01g0467 . . Hepe07g0305 Mch10g0310 . . . . . . . . . . . . Lsi07g00140 . . . . . . . . . . . . . . Cma16g00231 . Car16g00202 . . . . . . . . . . Cla07g01644 Cam07g1733 . . Clacu07g1717 Cmu07g1686 Cre07g2057 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001833 1 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 3 4 3 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00251 Cmo_Chr16 FPKM 13.291667 15.795571 19.291222 20.206951 16.83226 15.345584 18.745821 25.305433 23.586779 26.744061