Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00270 ATGGATAACTTATGCTGCTTCAATTCTGTTTATTCTCAGGTAGTGATATCTTCTCCTTTGGCTGTTTTTATGCACATTCATCTCGATATTACTGATTATGAACTACGAAAGTTTTATTTTGAACTGGGATGTCCCCTTGTCGTTAGAGGTCGTTCGCCTGGTAGCTCTGGAAAGGGCAGGGGCAACCAATGCCCTGCCAGGTATGGCTTTAGCTTAGTAAAAGGGAAAGCAAACCATCCCATGGAAGACTATCATGTTGCTAAATTTATAACAGTGCATGGCCATGAGCTAGGCCTTTTCGCCATATATGATGGACACTTAGGAGACAGTGTACCAGCCTATCTTCAGAAGCATCTATTTCCTAATATACTGAATGATGAGGAATTCTGGTCGAATCCCCGTAGCTCGATCTTTAAGGCTTACGAGACGACAGACCAAGCGATACTCTCACACAGTCCTGACTTGGGAAGAGGTGGATCCACCGCGGTCACTGCAATTTTGATAAACGGTCAGAAATTATGGGTGGCTAATGTTGGAGATTCACGAGCAGTCCTTTCGAGAAAAGGGCAGGAAGAGCAAATGTCTGTTGATCACGAGCCAAACACCGAGCGAGGAAGTATTGAGGACAGAGGTGGATTCGTCTCTAACATGCCAGGTCTGAAAACTGAATATCTAATGAATCTTCGAACGCCAAATGTTGTTAAATATGGCGGTCGTCGAGTAAAGTGGTTCAGAACTCTGAGCTTGCTATGGTTTTCATTGTTCAACTTCATAATAATGTCTGATTATTTCATAGTGAATGGGCAGCTAGCAGTTTCTAGAGCATTTGGCGACAAGAACCTCAAGACACACTTGCGATCTGATCCCGACATAAAGAATGCTGATATCGACTCCGACACCGAGCTTCTTATCTTAGCAAGTGATGGTCTATGGAAGGTGATGACGAATCAAGAAGCGGTGGATATAGCAAGAAGAACGAAGGATCCGCAGCGAGCAGCAAAACAATTAGCAGCAGAAGCGTTGAAACGGGAAAGCAAAGACGACATCTCGATCATCGTATTTGGAGGTCTGGGTTTGGCCTTTGGGTCTCCTTGGAACACCTGCCTGACATGTATGCAACTGTTCTAA 1128 44.41 MDNLCCFNSVYSQVVISSPLAVFMHIHLDITDYELRKFYFELGCPLVVRGRSPGSSGKGRGNQCPARYGFSLVKGKANHPMEDYHVAKFITVHGHELGLFAIYDGHLGDSVPAYLQKHLFPNILNDEEFWSNPRSSIFKAYETTDQAILSHSPDLGRGGSTAVTAILINGQKLWVANVGDSRAVLSRKGQEEQMSVDHEPNTERGSIEDRGGFVSNMPGLKTEYLMNLRTPNVVKYGGRRVKWFRTLSLLWFSLFNFIIMSDYFIVNGQLAVSRAFGDKNLKTHLRSDPDIKNADIDSDTELLILASDGLWKVMTNQEAVDIARRTKDPQRAAKQLAAEALKRESKDDISIIVFGGLGLAFGSPWNTCLTCMQLF 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1199573 1202225 - CmoCh16G002700.1 Cmo16g00270 399305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00270 375 PANTHER PROTEIN PHOSPHATASE 2C 265 353 IPR015655 GO:0004722|GO:0006470
Cmo16g00270 375 PANTHER PROTEIN PHOSPHATASE 2C 47 218 IPR015655 GO:0004722|GO:0006470
Cmo16g00270 375 MobiDBLite consensus disorder prediction 188 206 - -
Cmo16g00270 375 SUPERFAMILY PP2C-like 65 353 IPR036457 -
Cmo16g00270 375 ProSiteProfiles PPM-type phosphatase domain profile. 67 356 IPR001932 -
Cmo16g00270 375 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 47 218 - -
Cmo16g00270 375 SMART PP2C_4 63 354 IPR001932 -
Cmo16g00270 375 Pfam Protein phosphatase 2C 265 349 IPR001932 -
Cmo16g00270 375 Pfam Protein phosphatase 2C 76 216 IPR001932 -
Cmo16g00270 375 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 265 353 - -
Cmo16g00270 375 CDD PP2Cc 67 353 IPR001932 -
Cmo16g00270 375 MobiDBLite consensus disorder prediction 188 210 - -
Cmo16g00270 375 Gene3D - 54 356 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00547 Cmo-Chr9:2610033 Cmo16g00270 Cmo-Chr16:1199573 1.19E-136 dispersed
Cmo09g00846 Cmo-Chr9:4340957 Cmo16g00270 Cmo-Chr16:1199573 5.08E-102 dispersed
Cmo11g01995 Cmo-Chr11:13667941 Cmo16g00270 Cmo-Chr16:1199573 3.35E-96 dispersed
Cmo16g00270 Cmo-Chr16:1199573 Cmo09g00390 Cmo-Chr9:1719359 7.49E-54 dispersed
Cmo16g00270 Cmo-Chr16:1199573 Cmo04g00421 Cmo-Chr4:2094354 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00270 K17506 - csv:101214223 476.863