Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00272 ATGGACTCCGTCTTTGCTGCTGCGACGAGCAACATAGCTATATGTTGCGTTTCGAAGGCCTTGAATCGGAGGCTCTCCGAAATTGTTCGTAGAAGATGCGTTCGCGGTGGTGACCGAGCTCGCAATTTCAGCTGCATTTCCAGTTACCTTGCTCTATACGGAACTGGACTTATTGGTTCTTCTTCACCGTCGCTTAGGACTCTGCAAGTTGTTTTGCCTTCGCTGCAGCGTCGTTTGCGTTGCGTTTCGAGTTCCTCTGTGTCTTTTGCATCTGGTGGCGGGAATGGTGGTTTTGGAGGGAATAATGGCGGCGGAGGTCGTGGTGGAGATGGTGGACTGGGCGGTGGAGATGCGAATAAGTTTGTTTCTGGAAGTGCCGAGGAGGTTTCTTCACTATTGCCTAACGTGATTATTCTGGATGTTGGAGGAATGACATGCGGGGGATGTGCAGCAAGTGTGAAGAGAATTCTAGAGAATCAGCCACAAGTGTCATCTGCTAGTGTGAACCTCACAACAGAGACTGCAGTCATATGGCCAGTTCCGGCGGTTAAAGATTCACCTAATTGGCTAAAGCAGCTGGGAGAGACGCTTGCTAATCATCTAACTCGATGTGGTTTTGCATCTAGTCTTCGAGGTGAAAGCTCTTTTTTCACAAATACAAAGTATCGTCATTATGGCCAATGTTTAATTGTTGTTAACATGATCTCTGATGTAGTAAACCATAACCGCTTGCCTAATAATACAACTGTTCTTATGTGTCCAGAGTCAGGAAGAGACAATATCTTCCTGGTTTTTGATAGGAAGATGGAAGAAAAGCGCAATCGTTTAAAAGAGAGTGGCCGCAATCTTGTTTTTTCCTGGGCTTTGTGTGCTGTGTGCCTTCTTGGCCACATTTCTCATTTCTTTGGCGCTAAGGCTTCATGGATCCATACATTTCATACTACTCAATTTCATCTATCATTGTGCTTATTTACATTACTTGGCCCTGGTCGTCAACTTATTATTGAGGGTATGAAAAGTCTTGTCAAAGGAGCTCCAAATATGAACACTTTAGTTGGACTTGGAGCTCTATCATCCTTTACTGTTAGCTCATTGGCGGCCTTAATACCAAAACTTGGTTGGAAGGCTTTCTTTGAGGAACCAGTTATGTTAATAGCATTTGTATTGTTAGGAAGGAACCTTGAACAGAGAGCTAAAATTAGAGCTGCGAGTGATATGACAGGTCTTCTTAGTATTTTACCTTCAAAAGCTCGTCTTGTTGTTGATGGTGATACTGAATCGGGTTCAACGGTTGAAATTCCTTGTTCTAGTCTTTCAATTGGAGATGAAGTTATTGTCCTACCTGGGGACCGTGTTCCTGCTGATGGAATTGTGAAATCTGGTAGAAGCATTGTGGATGAGTCTAGTTTCACTGGGGAGCCATTACCTGTTACCAAGCTGCCTGGGAGCCAAGTTGCAGCAGGAACTATAAATCTTAATGGAACTCTTACAGTTGAGGTGCAGCGACCAGGAGGTGAGACTGCTATGGGAGATATCGTTCGTTTGGTAGAAGAGGCTCAAAGCCGGGAAGCTCCTGTTCAACGGTTGGCTGACAAGGTGTCTGGGCACTTCACTTATGGAGTAATGGCACTCTCTGCTGCAACTTTTATATTTTGGAGTCAATTTGGATCACGCATTCTGCCTGCAGCTCTTTACCATGGAAATTCAGTTTCATTGGCACTGCAGCTTTCTTGCAGTGTTCTGGTTATTGCTTGTCCATGTGCACTTGGCTTAGCTACTCCAACTGCAATGCTGGTTGGAACTTCATTAGGTGCAACTAAAGGATTACTTCTGCGGGGTGGAAATATCTTAGAGCAGTTTTCAATGGTAGATACTGTTGTCTTTGACAAAACAGGGACCTTGACAGTTGGGAAACCTGTTGTGACAAAGGTGATAAACTCACACGGCAATCATTCAGAAAATGATATTCTCAAGTTTGCTGCTGCAGTGGAATCTAACACAGTTCACCCAGTTGGCAAAGCAATTGTAGAAGCTGCTCGAGCTGTTAATGTTCAGAATTTGAAGAACAATTTCTTGACTAGCCAGTACCAGTATGTAATAGAGTACTTTCCAGGAAGGTGTACAGAAGTTGTGGTCGACGGAACATTCATTGAAGAACCTGGTTCTGGTGCTGTTGCAACAGTAGAAAACAGGATAATATCTGTCGGAACTTTGGACTGGGTTCAGAGGCATGGAGTTGTTGCCGATCATTTTCAAGAAACGGATGATCTCAAAGCTCAATCGGTCGTTTATGTAGGAATAGACAATATTCTTGCTGGTCATATTTATTATGAGGATGGCATACGGGAAGAGGCTAGTCATGTCATCGACACTTTATCTAGGCAAGGAATTAACACATACATGTTGTCTGGCGACAAAAGGAGTACTGCCGAGTACGTCGCATCTCTTGTTGGAATTCCAAAAGAGAAGGTACGATCTGGAGTTAAACCCCATGAAAAGAAGAAGTTTATTAGTGAACTTCAGGAGAGCCGCAACATTGTAGCCATGGTTGGTGATGGAATCAACGATGCTGCTGCTTTGGCTACTGCAGATATTGGAATTGCGATGGGTGGGGGTGTCGGAGCCGCCAGCGAGGTGTCTCCTATAGTGTTAATGGGCAACAGACTCTCTCAGTCAACAGTTTCAACAAAGGGCTCTCATGTAATTCCACATTTCCACCAAAGAGTTTTAGCTATGTCACTCAGCTGTGAATCATCGAGTGCTGGCAGGGCGCTGACAAACATTTCACTAGTTATAGTAGCTGTAGCATTACAGCAGCTTTTAGAAAACTTTCAGAGATTTAAGGGTGACAAATGCCTTCTCCTCATTGCATTAGATGCATTGTTGCTTGATGCTTTGGAGCTTAGCAGGTTAACCATGAAGACCGTGAAGCAAAACCTTTGGTGGGCTTTTGGATATAACATCGTGGGAATTCCAATTGCGGCAGGCGTATTGCTTCCTATTACTGGGACTATACTCACACCTTCCATTGCGGGTGCCCTTATGGGTCTGAGTTCCGTAGGTGGGAATTCCAATTGCGGCAGGCGTATTGCTTCCTATTACTGGGACTATACTCACACCTTCCATTGCGGGTGCCCTTATGGGTCTGAGTTCCGTAGGTGTTATGGCAAATTCACTACTTTTGAGATTAAGATTTTCTCATAA 3204 44.32 MDSVFAAATSNIAICCVSKALNRRLSEIVRRRCVRGGDRARNFSCISSYLALYGTGLIGSSSPSLRTLQVVLPSLQRRLRCVSSSSVSFASGGGNGGFGGNNGGGGRGGDGGLGGGDANKFVSGSAEEVSSLLPNVIILDVGGMTCGGCAASVKRILENQPQVSSASVNLTTETAVIWPVPAVKDSPNWLKQLGETLANHLTRCGFASSLRGESSFFTNTKYRHYGQCLIVVNMISDVVNHNRLPNNTTVLMCPESGRDNIFLVFDRKMEEKRNRLKESGRNLVFSWALCAVCLLGHISHFFGAKASWIHTFHTTQFHLSLCLFTLLGPGRQLIIEGMKSLVKGAPNMNTLVGLGALSSFTVSSLAALIPKLGWKAFFEEPVMLIAFVLLGRNLEQRAKIRAASDMTGLLSILPSKARLVVDGDTESGSTVEIPCSSLSIGDEVIVLPGDRVPADGIVKSGRSIVDESSFTGEPLPVTKLPGSQVAAGTINLNGTLTVEVQRPGGETAMGDIVRLVEEAQSREAPVQRLADKVSGHFTYGVMALSAATFIFWSQFGSRILPAALYHGNSVSLALQLSCSVLVIACPCALGLATPTAMLVGTSLGATKGLLLRGGNILEQFSMVDTVVFDKTGTLTVGKPVVTKVINSHGNHSENDILKFAAAVESNTVHPVGKAIVEAARAVNVQNLKNNFLTSQYQYVIEYFPGRCTEVVVDGTFIEEPGSGAVATVENRIISVGTLDWVQRHGVVADHFQETDDLKAQSVVYVGIDNILAGHIYYEDGIREEASHVIDTLSRQGINTYMLSGDKRSTAEYVASLVGIPKEKVRSGVKPHEKKKFISELQESRNIVAMVGDGINDAAALATADIGIAMGGGVGAASEVSPIVLMGNRLSQSTVSTKGSHVIPHFHQRVLAMSLSCESSSAGRALTNISLVIVAVALQQLLENFQRFKGDKCLLLIALDALLLDALELSRLTMKTVKQNLWWAFGYNIVGIPIAAGVLLPITGTILTPSIAGALMGLSSVGGNSNCGRRIASYYWDYTHTFHCGCPYGSEFRRCYGKFTTFEIKIFS 1067
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1209670 1223756 + CmoCh16G002720.1 Cmo16g00272 399307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00272 1067 ProSiteProfiles Heavy-metal-associated domain profile. 136 210 IPR006121 GO:0046872
Cmo16g00272 1067 ProSitePatterns Hypothetical cof family signature 2. 850 872 - -
Cmo16g00272 1067 Gene3D - 618 891 IPR023214 -
Cmo16g00272 1067 SFLD p-type atpase 610 889 IPR044492 -
Cmo16g00272 1067 Gene3D - 399 520 - -
Cmo16g00272 1067 ProSitePatterns Heavy-metal-associated domain. 141 170 IPR017969 GO:0046872
Cmo16g00272 1067 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 758 888 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo16g00272 1067 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 386 668 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo16g00272 1067 Gene3D - 638 781 IPR023299 GO:0000166
Cmo16g00272 1067 ProSitePatterns E1-E2 ATPases phosphorylation site. 629 635 IPR018303 -
Cmo16g00272 1067 SUPERFAMILY Calcium ATPase, transmembrane domain M 382 988 IPR023298 -
Cmo16g00272 1067 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 348 938 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cmo16g00272 1067 CDD HMA 139 206 IPR006121 GO:0046872
Cmo16g00272 1067 CDD P-type_ATPase_HM 283 1024 - -
Cmo16g00272 1067 Pfam Heavy-metal-associated domain 139 183 IPR006121 GO:0046872
Cmo16g00272 1067 SFLD Haloacid Dehalogenase 610 889 - -
Cmo16g00272 1067 Pfam haloacid dehalogenase-like hydrolase 623 864 - -
Cmo16g00272 1067 SUPERFAMILY HAD-like 615 890 IPR036412 -
Cmo16g00272 1067 PANTHER ATP7, ISOFORM B 121 1021 - -
Cmo16g00272 1067 SUPERFAMILY HMA, heavy metal-associated domain 136 185 IPR036163 GO:0046872
Cmo16g00272 1067 SUPERFAMILY Calcium ATPase, transduction domain A 427 516 IPR008250 -
Cmo16g00272 1067 PRINTS P-type cation-transporting ATPase superfamily signature 627 641 - -
Cmo16g00272 1067 PRINTS P-type cation-transporting ATPase superfamily signature 795 805 - -
Cmo16g00272 1067 PRINTS P-type cation-transporting ATPase superfamily signature 850 869 - -
Cmo16g00272 1067 PRINTS P-type cation-transporting ATPase superfamily signature 466 480 - -
Cmo16g00272 1067 PRINTS P-type cation-transporting ATPase superfamily signature 873 885 - -
Cmo16g00272 1067 Pfam E1-E2 ATPase 412 606 - -
Cmo16g00272 1067 Gene3D - 136 209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00365 Cmo-Chr9:1585811 Cmo16g00272 Cmo-Chr16:1209670 5.85E-177 dispersed
Cmo16g00272 Cmo-Chr16:1209670 Cmo10g00412 Cmo-Chr10:1870225 2.07E-60 dispersed
Cmo19g00275 Cmo-Chr19:2025483 Cmo16g00272 Cmo-Chr16:1209670 3.63E-29 dispersed
Cmo16g00272 Cmo-Chr16:1209670 Cmo07g00032 Cmo-Chr7:204486 1.18E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00272 K17686 - csv:101214702 1356.66