Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo16g00281 | ATGTTGGGGATGTTGGGTTCTTCGTCTTCTCTGTGGATCATTTTGACGCTTGGTTTTGTTTCGCTGCTCTCTGCTAATACCGAAGGCGATGCTTTGAATGCATTGAAGTCAAATTTACAAGATCCCAACGGTGTACTGCAGAGTTGGGATCCTACACTGGTTAATCCCTGCACATGGTTCCATGTTACCTGTGACAGTGATAATAGTGTCACTCGAGTTGATCTTGGAAATGCAAATCTATCTGGCACGTTAGTTCCACAACTTGGTGATCTTCCGAGTTTGCAATATTTGGAACTATATAGTAACAATATTACTGGAGAAATTCCGCGAGAAATTGGGCTTTTGACAAACTTGGTGAGCTTGGACCTTTACTTGAACAATTTAACTGGTCAAATACCTGTCACACTTGGGGAGCTTGGAAAACTGCGTTTCCTGCGTCTTAACAACAACAGCTTAACGGGAACCATTCCAATGTCATTAACTAATGTTAAATCCTTGCAAGTCCTGGATCTCTCATACAACCAGCTAACTGGAGATATTCCGGTCAATGGTTCTTTTTCTCTTTTTACCCCTATCAGTTTTGCTCATAATCTTCTTAATGAATCCACTGCACGTACACCACCACCTCCTTTACCTTCTTCACCAAGCCCCTCATCAGGCAATAGTGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGCTGCTGCTTTACTGTTTGCTGCACCAGCTGTTGCGGTTGCTCTGTGGCGTCGGAAGAAACCACAAGATCATTTCTTTGATGTACCTGCCGAAGAGGATCCGGAAGTTCATCTTGGTCAGCTCAAGAGGTTCTCTCTTCGTGAACTACAAGTTGCAACAGATCATTTTAGCAACAAACATATTCTTGGTAGGGGTGGTTTTGGCAAGGTCTATAAGGGACGGCTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTTAAAGAGGAACGTTCACAGGGTGGGGAGCTGCAATTCCAAACAGAAGTAGAGATGATCAGTATGGCTGTGCATCGTAATCTGCTCCGCCTACGTGGCTTTTGTATGACACCCACTGAACGGTTGCTGGTCTACCCATATATGGTTAATGGAAGTGTAGCATCATGTTTACGAGAACGTGGAGATTCACAGCCTCCACTTAATTGGTTGAATCGAAAACGCATTGCTTTGGGATCGGCAAGGGGGCTTGCCTATCTACATGATCATTGTGATCCTAAGATCATTCATCGCGATGTGAAAGCTGCAAATATTTTGCTTGACGAGGAGTATGAAGCCGTTGTTGGTGATTTTGGGTTGGCTAAACTCATGGACTACAAAGATACTCATGTCACAACTGCTGTACGAGGAACAATTGGGCATATAGCGCCCGAGTACCTTTCGACAGGAAAATCTTCCGAAAAGACTGATGTTTTTGGGTATGGGGTCATGCTTCTTGAACTCATAACTGGACAGAGAGCCTTCGATCTTGCCCGGCTTGCAAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTTCTGAAAGACAAGAGGTTGGAAACACTAGTTGATCCCGATCTTGCGGGAAAATATCCCGACGACGAAGTCGAGCAGCTTATACAAGTTGCATTGTTGTGCACACAAGGAACTCCTACAGAGCGGCCTAAGATGTCAGAGGTCGTACGGATGCTCGAGGGCGATGGTTTAGCTGAAAGATGGGAAGAATGGCAGAAAGAGGAGCGGTTTCATCAAGACGTAAGCCGCAATCCCCACCCGAGTGCAACGTGGATTCTCGACTCTACTGCTGAAATTCCTCCCGATGAACTGTCCGGTCCAAGATGA | 1839 | 45.51 | MLGMLGSSSSLWIILTLGFVSLLSANTEGDALNALKSNLQDPNGVLQSWDPTLVNPCTWFHVTCDSDNSVTRVDLGNANLSGTLVPQLGDLPSLQYLELYSNNITGEIPREIGLLTNLVSLDLYLNNLTGQIPVTLGELGKLRFLRLNNNSLTGTIPMSLTNVKSLQVLDLSYNQLTGDIPVNGSFSLFTPISFAHNLLNESTARTPPPPLPSSPSPSSGNSATGAIAGGVAAAAALLFAAPAVAVALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDHFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMVNGSVASCLRERGDSQPPLNWLNRKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDPDLAGKYPDDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLAERWEEWQKEERFHQDVSRNPHPSATWILDSTAEIPPDELSGPR | 612 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 1265397 | 1270877 | - | CmoCh16G002810.1 | Cmo16g00281 | 399316 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo16g00281 | 612 | MobiDBLite | consensus disorder prediction | 581 | 612 | - | - | |
Cmo16g00281 | 612 | ProSiteProfiles | Leucine-rich repeat profile. | 165 | 187 | IPR001611 | GO:0005515 | |
Cmo16g00281 | 612 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 412 | 424 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo16g00281 | 612 | SUPERFAMILY | Protein kinase-like (PK-like) | 268 | 564 | IPR011009 | - | |
Cmo16g00281 | 612 | SMART | serkin_6 | 289 | 563 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo16g00281 | 612 | PANTHER | BNAA08G11770D PROTEIN | 7 | 612 | IPR031048 | GO:0004675|GO:0005102|GO:0006468 | |
Cmo16g00281 | 612 | Gene3D | Transferase(Phosphotransferase) domain 1 | 366 | 583 | - | - | |
Cmo16g00281 | 612 | MobiDBLite | consensus disorder prediction | 201 | 222 | - | - | |
Cmo16g00281 | 612 | SUPERFAMILY | L domain-like | 27 | 202 | - | - | |
Cmo16g00281 | 612 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 7 | 612 | - | - | |
Cmo16g00281 | 612 | Pfam | Protein kinase domain | 290 | 561 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo16g00281 | 612 | ProSiteProfiles | Protein kinase domain profile. | 289 | 576 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo16g00281 | 612 | ProSitePatterns | Protein kinases ATP-binding region signature. | 295 | 317 | IPR017441 | GO:0005524 | |
Cmo16g00281 | 612 | Pfam | Leucine rich repeat N-terminal domain | 25 | 65 | IPR013210 | - | |
Cmo16g00281 | 612 | Gene3D | Phosphorylase Kinase; domain 1 | 258 | 365 | - | - | |
Cmo16g00281 | 612 | Gene3D | Ribonuclease Inhibitor | 24 | 205 | IPR032675 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g00017 | Cmo-Chr8:93006 | Cmo16g00281 | Cmo-Chr16:1265397 | 1.50E-54 | dispersed | |
Cmo09g01218 | Cmo-Chr9:9420581 | Cmo16g00281 | Cmo-Chr16:1265397 | 0 | dispersed | |
Cmo16g00281 | Cmo-Chr16:1265397 | Cmo05g00035 | Cmo-Chr5:125060 | 0 | dispersed | |
Cmo16g00281 | Cmo-Chr16:1265397 | Cmo04g00411 | Cmo-Chr4:2031640 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74954 | PF00069 | Pkinase | 1.50E-44 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo16g00281 | K13416 | - | csv:101216389 | 1108.2 |