Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00281 ATGTTGGGGATGTTGGGTTCTTCGTCTTCTCTGTGGATCATTTTGACGCTTGGTTTTGTTTCGCTGCTCTCTGCTAATACCGAAGGCGATGCTTTGAATGCATTGAAGTCAAATTTACAAGATCCCAACGGTGTACTGCAGAGTTGGGATCCTACACTGGTTAATCCCTGCACATGGTTCCATGTTACCTGTGACAGTGATAATAGTGTCACTCGAGTTGATCTTGGAAATGCAAATCTATCTGGCACGTTAGTTCCACAACTTGGTGATCTTCCGAGTTTGCAATATTTGGAACTATATAGTAACAATATTACTGGAGAAATTCCGCGAGAAATTGGGCTTTTGACAAACTTGGTGAGCTTGGACCTTTACTTGAACAATTTAACTGGTCAAATACCTGTCACACTTGGGGAGCTTGGAAAACTGCGTTTCCTGCGTCTTAACAACAACAGCTTAACGGGAACCATTCCAATGTCATTAACTAATGTTAAATCCTTGCAAGTCCTGGATCTCTCATACAACCAGCTAACTGGAGATATTCCGGTCAATGGTTCTTTTTCTCTTTTTACCCCTATCAGTTTTGCTCATAATCTTCTTAATGAATCCACTGCACGTACACCACCACCTCCTTTACCTTCTTCACCAAGCCCCTCATCAGGCAATAGTGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGCTGCTGCTTTACTGTTTGCTGCACCAGCTGTTGCGGTTGCTCTGTGGCGTCGGAAGAAACCACAAGATCATTTCTTTGATGTACCTGCCGAAGAGGATCCGGAAGTTCATCTTGGTCAGCTCAAGAGGTTCTCTCTTCGTGAACTACAAGTTGCAACAGATCATTTTAGCAACAAACATATTCTTGGTAGGGGTGGTTTTGGCAAGGTCTATAAGGGACGGCTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTTAAAGAGGAACGTTCACAGGGTGGGGAGCTGCAATTCCAAACAGAAGTAGAGATGATCAGTATGGCTGTGCATCGTAATCTGCTCCGCCTACGTGGCTTTTGTATGACACCCACTGAACGGTTGCTGGTCTACCCATATATGGTTAATGGAAGTGTAGCATCATGTTTACGAGAACGTGGAGATTCACAGCCTCCACTTAATTGGTTGAATCGAAAACGCATTGCTTTGGGATCGGCAAGGGGGCTTGCCTATCTACATGATCATTGTGATCCTAAGATCATTCATCGCGATGTGAAAGCTGCAAATATTTTGCTTGACGAGGAGTATGAAGCCGTTGTTGGTGATTTTGGGTTGGCTAAACTCATGGACTACAAAGATACTCATGTCACAACTGCTGTACGAGGAACAATTGGGCATATAGCGCCCGAGTACCTTTCGACAGGAAAATCTTCCGAAAAGACTGATGTTTTTGGGTATGGGGTCATGCTTCTTGAACTCATAACTGGACAGAGAGCCTTCGATCTTGCCCGGCTTGCAAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTTCTGAAAGACAAGAGGTTGGAAACACTAGTTGATCCCGATCTTGCGGGAAAATATCCCGACGACGAAGTCGAGCAGCTTATACAAGTTGCATTGTTGTGCACACAAGGAACTCCTACAGAGCGGCCTAAGATGTCAGAGGTCGTACGGATGCTCGAGGGCGATGGTTTAGCTGAAAGATGGGAAGAATGGCAGAAAGAGGAGCGGTTTCATCAAGACGTAAGCCGCAATCCCCACCCGAGTGCAACGTGGATTCTCGACTCTACTGCTGAAATTCCTCCCGATGAACTGTCCGGTCCAAGATGA 1839 45.51 MLGMLGSSSSLWIILTLGFVSLLSANTEGDALNALKSNLQDPNGVLQSWDPTLVNPCTWFHVTCDSDNSVTRVDLGNANLSGTLVPQLGDLPSLQYLELYSNNITGEIPREIGLLTNLVSLDLYLNNLTGQIPVTLGELGKLRFLRLNNNSLTGTIPMSLTNVKSLQVLDLSYNQLTGDIPVNGSFSLFTPISFAHNLLNESTARTPPPPLPSSPSPSSGNSATGAIAGGVAAAAALLFAAPAVAVALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDHFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMVNGSVASCLRERGDSQPPLNWLNRKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDPDLAGKYPDDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLAERWEEWQKEERFHQDVSRNPHPSATWILDSTAEIPPDELSGPR 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1265397 1270877 - CmoCh16G002810.1 Cmo16g00281 399316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00281 612 MobiDBLite consensus disorder prediction 581 612 - -
Cmo16g00281 612 ProSiteProfiles Leucine-rich repeat profile. 165 187 IPR001611 GO:0005515
Cmo16g00281 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Cmo16g00281 612 SUPERFAMILY Protein kinase-like (PK-like) 268 564 IPR011009 -
Cmo16g00281 612 SMART serkin_6 289 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00281 612 PANTHER BNAA08G11770D PROTEIN 7 612 IPR031048 GO:0004675|GO:0005102|GO:0006468
Cmo16g00281 612 Gene3D Transferase(Phosphotransferase) domain 1 366 583 - -
Cmo16g00281 612 MobiDBLite consensus disorder prediction 201 222 - -
Cmo16g00281 612 SUPERFAMILY L domain-like 27 202 - -
Cmo16g00281 612 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 612 - -
Cmo16g00281 612 Pfam Protein kinase domain 290 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00281 612 ProSiteProfiles Protein kinase domain profile. 289 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00281 612 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524
Cmo16g00281 612 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Cmo16g00281 612 Gene3D Phosphorylase Kinase; domain 1 258 365 - -
Cmo16g00281 612 Gene3D Ribonuclease Inhibitor 24 205 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00017 Cmo-Chr8:93006 Cmo16g00281 Cmo-Chr16:1265397 1.50E-54 dispersed
Cmo09g01218 Cmo-Chr9:9420581 Cmo16g00281 Cmo-Chr16:1265397 0 dispersed
Cmo16g00281 Cmo-Chr16:1265397 Cmo05g00035 Cmo-Chr5:125060 0 dispersed
Cmo16g00281 Cmo-Chr16:1265397 Cmo04g00411 Cmo-Chr4:2031640 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74954 PF00069 Pkinase 1.50E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00281 K13416 - csv:101216389 1108.2