Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00283 ATGTTGATTGGAAAGACCATGTCATCTGAGAATTCATCGGAAAAAGTAGCCGTAGACGCCGATCAATCAGTGCAGTCGAGAATGATGAAGCTGCAAACATATGCGGGGATTAGTTTCATTGCAACCATAGTGGTTATCTATCATGCCTTCAACAGTAGAGGCCAGTTCTACCCAGCACTGGTCTATTTATCGACTTCCAAGATAAATCTAGTGCTTCTTCTCAATATGGGTCTAGTCATCATGTGCATTTTGTGGCAGCTAACAAAGAAAATATTTCTCGGTTCTCTTAGAGAAGCAGAGGTTGAGAGGCTCAACGAGCAATCATGGAAGGAGTTGATGGAAATCCTCTTTGCCATAACTATTTTCCGCCAAGATTTTTCTGTTTCATTCCTTGGTATGGTTACGGCTCTGTTGTTGATCAAAGCTTTGCATTGGTTGGCTCAGAAGAGGGTTGAATACATGGAAACCACTCCATCGGTGCCGTTGTTGTCTCATATCCGGATAGTTTCCTTCTTAGGCTTCCTCTTTGTTCTAGATAGTCTGTTTTTTTATAATTCGATAGAATCTCTGATACAGACAAGGAAGGCCTCGGTTTCCCTCTTCTTTTCATTTGAGTATATGATTCTTGCAACAACGGCTGTGTCAACGTTTGTAAAATATATTTTCTATGTCAGTGATGTACTCATGGAGGGACAATGGGAAAGGAAGCCCGTCTATACATTTTACTTGGAACTTATCCGAGACTTACTTCACTTGTCAATGTACCTGTGTTTCTTTCTTGTGATTTTCATGACCTATGGTGTGCCTTTGCACTTGATCCGAGAGCTCTATGAGATCTTTAGGAATTTTAGGATTCGTATTGCAGATTACATCCGTTATAGAAAGATTACTTCAAACATGAATGATCGCTTTCCTGATGCAACGCCTGAAGAACTCAATTCAAGTGACGCAACATGCATTATCTGTCGTGAAGAGATGACAGTTGCAAAGAAACTAGTATGTGGACATCTTTTTCATGTCCATTGCCTCCGATCCTGGTTGGAGCGACAACATACTTGCCCAACCTGCAGAGCCCTTGTTGTACCACCTGAAGGTTTAAGCACAGCAGCCGGTCATCATGGACCACAATCTGATGCTAACCAACAAGGAACAGGAACCACAAGTTCATCCGCGCAAGGTACGAGTGATACAGGTGTTGCTAATGATAATTTGAGCCATCATCAGGCTAGAGTCCGAGCTGCTGCGGCTGCAGCTTCTGTATATGAGAAATCATATGTTTATCCTTGTGCGAGCACATTAGTATGGTCTCCTGGATATGCAGTAGTTCCTCAGGTTGAAAGACCTTTGCCTGACTCCAATAACATAGAACCAAATGGACATCCACAACAATTTTCTTTTACCGGCGGCCCTTCCAACCTGTTCTTCACTCAATTTCCCCAGAATCTTTTTGTTCCTTTTCAGCCACGAGAGGGTACTGGAAACAGTACGGACGGATTGGGCAGTAGTCAAAATGTATCAGGCTTACATCTTGAAGCTCAACAAAGATTTCTCCAGCAACAGATTGAGATCCTACAGAATCAGCTGCAACATCTCCGTAAACCAGAAGTTGAGGAAAGCTCAGGAGCAGGTGAGGCAGATAAGAAAGGGAAAAGTGTAGCATTCTCGTCACCGTCGCCATCGCCGTCGTCATCTGATTCTCGATGA 1704 43.13 MLIGKTMSSENSSEKVAVDADQSVQSRMMKLQTYAGISFIATIVVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLVIMCILWQLTKKIFLGSLREAEVERLNEQSWKELMEILFAITIFRQDFSVSFLGMVTALLLIKALHWLAQKRVEYMETTPSVPLLSHIRIVSFLGFLFVLDSLFFYNSIESLIQTRKASVSLFFSFEYMILATTAVSTFVKYIFYVSDVLMEGQWERKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYGVPLHLIRELYEIFRNFRIRIADYIRYRKITSNMNDRFPDATPEELNSSDATCIICREEMTVAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGLSTAAGHHGPQSDANQQGTGTTSSSAQGTSDTGVANDNLSHHQARVRAAAAAASVYEKSYVYPCASTLVWSPGYAVVPQVERPLPDSNNIEPNGHPQQFSFTGGPSNLFFTQFPQNLFVPFQPREGTGNSTDGLGSSQNVSGLHLEAQQRFLQQQIEILQNQLQHLRKPEVEESSGAGEADKKGKSVAFSSPSPSPSSSDSR 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1272373 1277352 - CmoCh16G002830.1 Cmo16g00283 399318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00283 567 SUPERFAMILY RING/U-box 299 363 - -
Cmo16g00283 567 MobiDBLite consensus disorder prediction 367 401 - -
Cmo16g00283 567 CDD RING-H2_synoviolin 316 357 - -
Cmo16g00283 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 362 IPR013083 -
Cmo16g00283 567 PANTHER RING ZINC FINGER PROTEIN 28 475 - -
Cmo16g00283 567 ProSiteProfiles Zinc finger RING-type profile. 319 357 IPR001841 -
Cmo16g00283 567 MobiDBLite consensus disorder prediction 532 567 - -
Cmo16g00283 567 PANTHER - 28 475 - -
Cmo16g00283 567 MobiDBLite consensus disorder prediction 553 567 - -
Cmo16g00283 567 SMART ring_2 319 356 IPR001841 -
Cmo16g00283 567 MobiDBLite consensus disorder prediction 373 401 - -
Cmo16g00283 567 Pfam Ring finger domain 318 357 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01067 Cmo-Chr2:6507069 Cmo16g00283 Cmo-Chr16:1272373 9.12E-23 dispersed
Cmo07g01242 Cmo-Chr7:6789457 Cmo16g00283 Cmo-Chr16:1272373 3.75E-10 dispersed
Cmo16g00283 Cmo-Chr16:1272373 Cmo15g01406 Cmo-Chr15:9576912 6.83E-10 dispersed
Cmo16g00283 Cmo-Chr16:1272373 Cmo04g00409 Cmo-Chr4:2024454 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00283 K10601 - csv:101215351 941.028