Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00284 ATGATCGATCTTGCATGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCCTTGAGATATTCGATCAACAAGGATTCAGCTTATTTTCCTGCAAATCGTGAGCTTGCAGCTCAAGGGCACATGGGTACAAGGACACAGCAACAATGCCGAGAAGACAACGAGGATGACCTCCCAAGTGGCCCTGGTGCCGCCACAATTTCGAGTCAGTCTGTTTCCATGAGTGGCAGTGTGGGGTCTCCTTCTAGCCGCAGCGACCAAACCATGGCCACGCCTGCCAGCGACAAAGCGTTTCTTCGATTGAACAACCCCGACATCCATGGCGACGAGGCGGGGTCGCAAGGACCTATTGGTAACGTGAAGAAAAAGAGGGGTCAGCGTGCTGTTGGAGGGGACAAGAGTGGAAGGGGGCTTCGCCAATTTAGCATGAAAGTCTGTGAGAAAGTGGAGAGTAAGGGGAGAACGAACTATAACGAGGTTGCAGATGAACTTGTTGCCGAGTTTGCAGATCCGGGCAACGGTCTCGCATCGCCAGATCAGCAACAGTACGATGAAAAAAACATCAGGCGAAGGGTATATGATGCCCTGAATGTTCTCATGGCAATGGATATTATATCAAAGGATAAGAAGGAGATACAATGGAAGGGTCTGCCACGTACCAGCGCGAATGATATTGAAGAGCTAAAGGCCGAGCGTCTTGGACTTAGAAAAAGGATAGAAAAGAAAGCGGCATACTTGCAAGAGCTGGAGGAACAGTATGTAGGTCTTCAGAACCTAATACAGCGAAACGAACAGTTATTCAGTTACGAGAATGCTCCGAGTGGTGGCGTGTCTTTACCTTTCATCCTCGTGCAGACACGGCCTCATGCAACTGTTGAGATAGAAATTTCAGAAGACATGCAGCTGGTGCATTTCGACTTCAACAGTACTCCTTTTGAGCTCCATGATGACAACTACGTTTTGAAGGCAATGAAATTTTGCGACAGACCGCAACACGACGACACGGCACAAAATTTTACTCCCGATGGGGGGGAGGGCTCTAGCATGTATCGACCACACCGGACCCCTCTTCCTTCAATGTCTAACACGCCGATTAGAACTCCAACCTCACCACCACTTCCCGGAATTATAAAAGCTCGCATCAAACACGAACATTGA 1155 48.66 MIDLACGVIRISNNVLALRYSINKDSAYFPANRELAAQGHMGTRTQQQCREDNEDDLPSGPGAATISSQSVSMSGSVGSPSSRSDQTMATPASDKAFLRLNNPDIHGDEAGSQGPIGNVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTNYNEVADELVAEFADPGNGLASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSANDIEELKAERLGLRKRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSYENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQHDDTAQNFTPDGGEGSSMYRPHRTPLPSMSNTPIRTPTSPPLPGIIKARIKHEH 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1278253 1284253 + CmoCh16G002840.1 Cmo16g00284 399319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00284 384 MobiDBLite consensus disorder prediction 40 135 - -
Cmo16g00284 384 Gene3D Transcription factor DP 221 341 IPR038168 -
Cmo16g00284 384 Gene3D - 128 220 IPR036388 -
Cmo16g00284 384 PANTHER TRANSCRIPTION FACTOR DP 40 384 IPR015648 GO:0005667|GO:0051726
Cmo16g00284 384 MobiDBLite consensus disorder prediction 355 374 - -
Cmo16g00284 384 CDD DP_DD 220 323 IPR014889 -
Cmo16g00284 384 PIRSF Txn_factor_DP 36 384 IPR015648 GO:0005667|GO:0051726
Cmo16g00284 384 Pfam E2F/DP family winged-helix DNA-binding domain 135 215 IPR003316 GO:0005667|GO:0006355
Cmo16g00284 384 SUPERFAMILY Winged helix DNA-binding domain 135 216 IPR036390 -
Cmo16g00284 384 SUPERFAMILY E2F-DP heterodimerization region 222 334 IPR037241 -
Cmo16g00284 384 SMART E2F_TDP_2 132 215 IPR003316 GO:0005667|GO:0006355
Cmo16g00284 384 MobiDBLite consensus disorder prediction 62 91 - -
Cmo16g00284 384 SMART DP_2 222 382 IPR014889 -
Cmo16g00284 384 Coils Coil 231 265 - -
Cmo16g00284 384 PANTHER TRANSCRIPTION FACTOR DP 40 384 - -
Cmo16g00284 384 Pfam Transcription factor DP 223 332 IPR014889 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00284 K04683 TFDP1; transcription factor Dp-1 - csv:101216863 617.076
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00284 Cmo-Chr16:1278253 Cmo12g00730 Cmo-Chr12:5640560 1.38E-08 dispersed
Cmo16g00284 Cmo-Chr16:1278253 Cmo04g00407 Cmo-Chr4:2006727 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo18g00114 CCT,CST 18 393 E2F-DP Transcription Factor Family AT3G48160 54.6 2.3e-103 373.2
Cmo04g00407 . 83 286 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-59 227.3
Cmo16g00284 . 121 324 E2F-DP Transcription Factor Family AT5G02470 54.6 9.7e-59 224.6
Cmo03g01117 CST 11 460 E2F-DP Transcription Factor Family AT2G36010 52.3 1.6e-111 400.6
Cmo07g00858 CST 353 796 E2F-DP Transcription Factor Family AT2G36010 51.6 8.4e-108 388.3
Cmo02g01350 CST 21 454 E2F-DP Transcription Factor Family AT2G36010 51.0 7.9e-106 381.7
Cmo20g00168 CST 21 261 E2F-DP Transcription Factor Family AT2G36010 56.1 1.7e-63 241.1
Cmo02g01350 CST 24 461 E2F-DP Transcription Factor Family AT5G22220 52.5 7.3e-101 365.2
Cmo03g01117 CST 50 450 E2F-DP Transcription Factor Family AT5G22220 50.1 1.4e-88 324.3
Cmo20g00168 CST 10 261 E2F-DP Transcription Factor Family AT5G22220 60.2 8.8e-62 235.3
Cmo12g00363 CST 153 409 E2F-DP Transcription Factor Family AT1G47870 52.9 3.8e-66 249.6
Cmo05g00304 CST 155 415 E2F-DP Transcription Factor Family AT1G47870 52.7 2.7e-64 243.4
Cmo04g00407 . 83 286 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-59 227.3
Cmo16g00284 . 121 324 E2F-DP Transcription Factor Family AT5G02470 54.6 9.7e-59 224.6
Cmo02g01350 CST 24 461 E2F-DP Transcription Factor Family AT5G22220 52.5 7.3e-101 365.2
Cmo03g01117 CST 50 450 E2F-DP Transcription Factor Family AT5G22220 50.1 1.4e-88 324.3
Cmo20g00168 CST 10 261 E2F-DP Transcription Factor Family AT5G22220 60.2 8.8e-62 235.3
Cmo03g01117 CST 11 460 E2F-DP Transcription Factor Family AT2G36010 52.3 1.6e-111 400.6
Cmo07g00858 CST 353 796 E2F-DP Transcription Factor Family AT2G36010 51.6 8.4e-108 388.3
Cmo02g01350 CST 21 454 E2F-DP Transcription Factor Family AT2G36010 51.0 7.9e-106 381.7
Cmo20g00168 CST 21 261 E2F-DP Transcription Factor Family AT2G36010 56.1 1.7e-63 241.1
Cmo12g00363 CST 153 409 E2F-DP Transcription Factor Family AT1G47870 52.9 3.8e-66 249.6
Cmo05g00304 CST 155 415 E2F-DP Transcription Factor Family AT1G47870 52.7 2.7e-64 243.4
Cmo18g00114 CCT,CST 18 393 E2F-DP Transcription Factor Family AT3G48160 54.6 2.3e-103 373.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11257 PF08781 DP 2.20E-40 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00284 Cmo_Chr16 FPKM 38.412361 42.001091 67.342316 67.917641 44.762188 46.876492 44.854935 109.72197 106.858536 102.059441