Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00284 ATGATCGATCTTGCATGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCCTTGAGATATTCGATCAACAAGGATTCAGCTTATTTTCCTGCAAATCGTGAGCTTGCAGCTCAAGGGCACATGGGTACAAGGACACAGCAACAATGCCGAGAAGACAACGAGGATGACCTCCCAAGTGGCCCTGGTGCCGCCACAATTTCGAGTCAGTCTGTTTCCATGAGTGGCAGTGTGGGGTCTCCTTCTAGCCGCAGCGACCAAACCATGGCCACGCCTGCCAGCGACAAAGCGTTTCTTCGATTGAACAACCCCGACATCCATGGCGACGAGGCGGGGTCGCAAGGACCTATTGGTAACGTGAAGAAAAAGAGGGGTCAGCGTGCTGTTGGAGGGGACAAGAGTGGAAGGGGGCTTCGCCAATTTAGCATGAAAGTCTGTGAGAAAGTGGAGAGTAAGGGGAGAACGAACTATAACGAGGTTGCAGATGAACTTGTTGCCGAGTTTGCAGATCCGGGCAACGGTCTCGCATCGCCAGATCAGCAACAGTACGATGAAAAAAACATCAGGCGAAGGGTATATGATGCCCTGAATGTTCTCATGGCAATGGATATTATATCAAAGGATAAGAAGGAGATACAATGGAAGGGTCTGCCACGTACCAGCGCGAATGATATTGAAGAGCTAAAGGCCGAGCGTCTTGGACTTAGAAAAAGGATAGAAAAGAAAGCGGCATACTTGCAAGAGCTGGAGGAACAGTATGTAGGTCTTCAGAACCTAATACAGCGAAACGAACAGTTATTCAGTTACGAGAATGCTCCGAGTGGTGGCGTGTCTTTACCTTTCATCCTCGTGCAGACACGGCCTCATGCAACTGTTGAGATAGAAATTTCAGAAGACATGCAGCTGGTGCATTTCGACTTCAACAGTACTCCTTTTGAGCTCCATGATGACAACTACGTTTTGAAGGCAATGAAATTTTGCGACAGACCGCAACACGACGACACGGCACAAAATTTTACTCCCGATGGGGGGGAGGGCTCTAGCATGTATCGACCACACCGGACCCCTCTTCCTTCAATGTCTAACACGCCGATTAGAACTCCAACCTCACCACCACTTCCCGGAATTATAAAAGCTCGCATCAAACACGAACATTGA 1155 48.66 MIDLACGVIRISNNVLALRYSINKDSAYFPANRELAAQGHMGTRTQQQCREDNEDDLPSGPGAATISSQSVSMSGSVGSPSSRSDQTMATPASDKAFLRLNNPDIHGDEAGSQGPIGNVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTNYNEVADELVAEFADPGNGLASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSANDIEELKAERLGLRKRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSYENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQHDDTAQNFTPDGGEGSSMYRPHRTPLPSMSNTPIRTPTSPPLPGIIKARIKHEH 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1278253 1284253 + CmoCh16G002840.1 Cmo16g00284 399319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00284 384 MobiDBLite consensus disorder prediction 40 135 - -
Cmo16g00284 384 Gene3D Transcription factor DP 221 341 IPR038168 -
Cmo16g00284 384 Gene3D - 128 220 IPR036388 -
Cmo16g00284 384 PANTHER TRANSCRIPTION FACTOR DP 40 384 IPR015648 GO:0005667|GO:0051726
Cmo16g00284 384 MobiDBLite consensus disorder prediction 355 374 - -
Cmo16g00284 384 CDD DP_DD 220 323 IPR014889 -
Cmo16g00284 384 PIRSF Txn_factor_DP 36 384 IPR015648 GO:0005667|GO:0051726
Cmo16g00284 384 Pfam E2F/DP family winged-helix DNA-binding domain 135 215 IPR003316 GO:0005667|GO:0006355
Cmo16g00284 384 SUPERFAMILY Winged helix DNA-binding domain 135 216 IPR036390 -
Cmo16g00284 384 SUPERFAMILY E2F-DP heterodimerization region 222 334 IPR037241 -
Cmo16g00284 384 SMART E2F_TDP_2 132 215 IPR003316 GO:0005667|GO:0006355
Cmo16g00284 384 MobiDBLite consensus disorder prediction 62 91 - -
Cmo16g00284 384 SMART DP_2 222 382 IPR014889 -
Cmo16g00284 384 Coils Coil 231 265 - -
Cmo16g00284 384 PANTHER TRANSCRIPTION FACTOR DP 40 384 - -
Cmo16g00284 384 Pfam Transcription factor DP 223 332 IPR014889 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00284 Cmo-Chr16:1278253 Cmo12g00730 Cmo-Chr12:5640560 1.38E-08 dispersed
Cmo16g00284 Cmo-Chr16:1278253 Cmo04g00407 Cmo-Chr4:2006727 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11257 PF08781 DP 2.20E-40 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00284 K04683 - csv:101216863 617.076