Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00295 ATGGAAACTGCTCTCTCTGCTTCTTCTTCAGTTTCTTACTCCCTTTTTTCCTCTTCTTCTCAGCAGCCTCACAGGAGCTTCTTCAAGACCTCACATATCTTTGAGTTTAAGCTGAGAACGAGGAAAATGGAGCACACCCATTTGAAATTGGCTACCTCTGTCAACTGCAGCCACCCTGGACTGACTCAAGAAGTTGAAAGTAACAAGATGAACGTTGTGATAGAAACCGAAACGCGGCAAGACTTATTCGAGGAAATCAAACATCGATTTCTAAGCTTTAAAAGGAATACATATATGAAAAATTTTGAACATTTTCAACGTCTTTCCGATGCTCAATCTCCCAAATTTTTGGTGATTTCTTGTGCAGATTCTAGAGTTTGTCCCTCGAACGTTTTAGGTTTCCAACCCGGAGAAGCCTTTCTTGTTCGCAATATCGCGAATTTGGTTGTACCCTTCGAGAAAGGACCATCAGAAACACAAGCTGCTTTGCAATTCTCTGTTAACACGCTCGAAGTTGAAAACATTTTCGTCATTGGTCATAGCTGTTGTGGGGGAATTCGCGCACTTATGAGTATGCAAGACGAAAAACCGAGCTGTTTTATCACAAATTGGGTTATTAATGGAAAGACCGCAAAAATAAGAACAAAAGCTGCTGCTTCCAACCTCAACTTCGACCAGCAATGCCGACACTGTGAAAAGGAATCGCTCGACAATTCGCTGCTGAACTTGCTGACATACCCTTGGATTGAAGAAAAGGTGAAGAAAGGAAGCCTTGCCATTCATGGTGGCTACTACGACTTTGTCGACGGTACGTTCGAGAAATGGACTCTTGATTACGAAGCGAGCTGCGTTAAAGAGGATACTCGTCGACTGGCTGTAAAAAACCGAGAATTTTGGTCGTAG 903 42.75 METALSASSSVSYSLFSSSSQQPHRSFFKTSHIFEFKLRTRKMEHTHLKLATSVNCSHPGLTQEVESNKMNVVIETETRQDLFEEIKHRFLSFKRNTYMKNFEHFQRLSDAQSPKFLVISCADSRVCPSNVLGFQPGEAFLVRNIANLVVPFEKGPSETQAALQFSVNTLEVENIFVIGHSCCGGIRALMSMQDEKPSCFITNWVINGKTAKIRTKAAASNLNFDQQCRHCEKESLDNSLLNLLTYPWIEEKVKKGSLAIHGGYYDFVDGTFEKWTLDYEASCVKEDTRRLAVKNREFWS 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1336227 1339517 - CmoCh16G002950.1 Cmo16g00295 399330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00295 300 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 121 128 IPR015892 GO:0004089|GO:0008270|GO:0015976
Cmo16g00295 300 Pfam Carbonic anhydrase 117 271 IPR001765 GO:0004089|GO:0008270
Cmo16g00295 300 SMART Pro_CA_2 109 276 IPR001765 GO:0004089|GO:0008270
Cmo16g00295 300 SUPERFAMILY beta-carbonic anhydrase, cab 73 282 IPR036874 GO:0004089|GO:0008270
Cmo16g00295 300 PANTHER CARBONIC ANHYDRASE 17 300 - -
Cmo16g00295 300 PANTHER CARBONIC ANHYDRASE 17 300 IPR001765 GO:0004089|GO:0008270
Cmo16g00295 300 Gene3D Carbonic anhydrase 70 285 IPR036874 GO:0004089|GO:0008270
Cmo16g00295 300 CDD beta_CA_cladeB 89 275 IPR045066 GO:0004089|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00295 K01673 cynT, can; carbonic anhydrase [EC:4.2.1.1] - csv:101214659 505.753
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00150 Cmo-Chr12:975836 Cmo16g00295 Cmo-Chr16:1336227 1.43E-103 dispersed
Cmo14g00665 Cmo-Chr14:3377784 Cmo16g00295 Cmo-Chr16:1336227 2.16E-59 dispersed
Cmo16g00295 Cmo-Chr16:1336227 Cmo18g00804 Cmo-Chr18:9492720 5.23E-56 dispersed
Cmo16g00295 Cmo-Chr16:1336227 Cmo11g01691 Cmo-Chr11:11979527 1.26E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g954 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00920 Cam10g0940 Cec10g0979 Cco10g0938 Clacu10g0965 Cmu10g1748 Cre10g1124 . . . . . . . . . . . . . . . . . . Cmo16g00295 . . . . Cpe14g00229 Cpe01g00595 . . . . . . . . . . . . . . . . . Cme07g02244
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001553 2 9 2 1 2 2 2 2 2 1 2 2 2 2 2 2 2 4 3 2 2 2 3 2 1 2 3 4 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00295 Cmo_Chr16 FPKM 2.702627 2.180454 0.761304 0.849792 1.866729 1.268538 1.739902 0.0 0.0 0.0