Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00296 ATGACGAGACAAAAAATTCAGATTAAAAAAATCGATAATATAGCAGCTAGGCAAGTGACGTTTTCAAAGAGGAGAAGAGGGCTGTTCAAGAAAGCTCATGAACTTGCTACTCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGGAAGCTCTTTGATTATTCTAGCTCAAGCATGCACGAGTTACTTGGAAGACATAATAAGCTACCCGAGGTGAATAACTTTTGCCAGCCTCTATTTCAGATGGAAAAGAGTGTGTGCGCTAATTTGAGAGAGGAATTTGCAGCCAAAACCAAAGAACTTAGGCATATGAAGGGAGAAGAACTTGAAGAACTTGGAATAGAAGAATTAAAGCAGCTCGAGAAATTGCTCGAGATTGGTTTGAATCGTGTTATAGAGACAAAGGATGAAAAGTTTCTAAAAGAGATCGAGGCTGTCAAGGAGAAGGAAGCTTTGCTGACGAAAGAGAATCAGAGACTGAGGAATCAAGTGAGAGCTTTGAATAGAGATGAGCAAGAACAGCAAGCAGTGGGTGTTGGTGGGAGCTCCTTGGGCTCAAAGTCAATCACTAGCAATAGCAGCTCCTCACCAAACCCTAGTTCTCAAGATTGTGATGATATTTCTCTCAAATTGGGTCTTTGA 651 40.86 MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMHELLGRHNKLPEVNNFCQPLFQMEKSVCANLREEFAAKTKELRHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEKEALLTKENQRLRNQVRALNRDEQEQQAVGVGGSSLGSKSITSNSSSSPNPSSQDCDDISLKLGL 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1342335 1346091 + CmoCh16G002960.1 Cmo16g00296 399331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00296 216 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo16g00296 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 214 - -
Cmo16g00296 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo16g00296 216 MobiDBLite consensus disorder prediction 178 208 - -
Cmo16g00296 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo16g00296 216 MobiDBLite consensus disorder prediction 169 216 - -
Cmo16g00296 216 Coils Coil 146 180 - -
Cmo16g00296 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo16g00296 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo16g00296 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo16g00296 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo16g00296 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo16g00296 216 Coils Coil 90 110 - -
Cmo16g00296 216 Gene3D - 15 76 IPR036879 GO:0003677|GO:0046983
Cmo16g00296 216 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 214 - -
Cmo16g00296 216 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Cmo16g00296 216 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Cmo16g00296 216 Pfam K-box region 90 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00296 - - - csv:101223132 270.781
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00296 Cmo-Chr16:1342335 Cmo19g00492 Cmo-Chr19:5857286 1.54E-58 dispersed
Cmo16g00296 Cmo-Chr16:1342335 Cmo16g00301 Cmo-Chr16:1370498 1.16E-34 proximal
Cmo06g00535 Cmo-Chr6:2584117 Cmo16g00296 Cmo-Chr16:1342335 5.57E-07 transposed
Cmo07g01235 Cmo-Chr7:6747714 Cmo16g00296 Cmo-Chr16:1342335 4.11E-101 transposed
Cmo16g00296 Cmo-Chr16:1342335 Cmo03g00881 Cmo-Chr3:6865695 1.17E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g909 . . . . . Bpe12g00712 . . . . . . . . . . . Bhi05g00942 . . . . . . Cla10g00921 Cam10g0941 Cec10g0980 Cco10g0939 Clacu10g0966 Cmu10g1749 Cre10g1125 . . . . . . . . . . Bda15g00490 . . . . Bma08g00038 . . Cmo16g00296 . . . . Cpe14g00230 Cpe01g00370 . . . . . . . . . . . . . . . . . Cme07g02236
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000411 4 12 1 3 3 2 4 1 1 3 2 1 4 3 3 6 1 8 5 2 3 4 3 3 2 3 3 11 13 4 118
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11258 PF01486 K-box 1.40E-15 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00296 Cmo_Chr16 FPKM 51.459595 50.748737 50.66774 51.643272 61.7411 71.425941 61.350903 44.32925 45.261631 38.105412