Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00301 ATGGGAAGAGGGAAGATAGTGATAAGAAGAATAGACAATTCAACGAGCAGACAAGTGACGTTTTCTAAGAGAAGAAGTGGGTTACTGAAGAAGGCTCGAGAGCTTTCGATTCTTTGTGATGCTGAGGTTGGATTGATCATTTTTTCAAGCACTGGGAAGCTCTATGACTATTCCAGCTCCAGCATAAGGTCAATTACTGATCGCTACAACAAGATGAAAGAGGAGCAAAATCAGTTGATGAACCCTGTTTCAGAACTCCAGTTTTGGAAAAGAGAGGCAGCTGGTTTGAAGCAACAGCTGCATTACATGCAAGAATGTCACAGACAATTAATGGGTGAAGAACTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTGGAAAGCCAGTTGGAGATGAGTTTGAAAGGTGTCCGTGTGAAAAAGGAAAAGATTTTAAGCGAGGAAATTACTCAACTAAGACAGAAGGTCTATGGACCAATGGAAGTGGATAAAACGAGCAGTAGCACAGTTCATCAATTCACTTTCGCCAATAGATACGCTATGCCTGCTCCCGTCCATCTACAGCTAAGACAGCCACAACCACAAAACAACGAAACATCAGTACCAGGGATAAAGCTGGGACCAGACTCTGAAGTTGTGATGCCAATTAGCTGA 654 42.51 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGLIIFSSTGKLYDYSSSSIRSITDRYNKMKEEQNQLMNPVSELQFWKREAAGLKQQLHYMQECHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSEEITQLRQKVYGPMEVDKTSSSTVHQFTFANRYAMPAPVHLQLRQPQPQNNETSVPGIKLGPDSEVVMPIS 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1370498 1380015 + CmoCh16G003010.1 Cmo16g00301 399336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00301 217 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo16g00301 217 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo16g00301 217 Pfam K-box region 84 156 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo16g00301 217 ProSiteProfiles K-box domain profile. 86 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo16g00301 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01520 Cmo-Chr1:11729875 Cmo16g00301 Cmo-Chr16:1370498 2.66E-26 dispersed
Cmo09g00587 Cmo-Chr9:2887070 Cmo16g00301 Cmo-Chr16:1370498 2.52E-33 dispersed
Cmo09g00589 Cmo-Chr9:2898282 Cmo16g00301 Cmo-Chr16:1370498 1.14E-27 dispersed
Cmo16g00301 Cmo-Chr16:1370498 Cmo20g00279 Cmo-Chr20:1353372 1.17E-46 dispersed
Cmo19g00492 Cmo-Chr19:5857286 Cmo16g00301 Cmo-Chr16:1370498 1.16E-32 dispersed
Cmo16g00296 Cmo-Chr16:1342335 Cmo16g00301 Cmo-Chr16:1370498 1.16E-34 proximal
Cmo04g00439 Cmo-Chr4:2182591 Cmo16g00301 Cmo-Chr16:1370498 5.78E-09 transposed
Cmo04g00441 Cmo-Chr4:2187309 Cmo16g00301 Cmo-Chr16:1370498 8.96E-26 transposed
Cmo16g00301 Cmo-Chr16:1370498 Cmo03g00892 Cmo-Chr3:6914599 3.62E-48 wgd
Cmo16g00301 Cmo-Chr16:1370498 Cmo04g00438 Cmo-Chr4:2179770 5.72E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11259 PF01486 K-box 7.90E-22 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00301 K09264 - csv:101203098 340.502