Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00305 ATGGCCACCGGTGCGCTGCTCCGTTCTCTTCGACGTCGCGATTTAGCATCCTCCTCCCTTGCAGCTTACCGATCATTAACAAGCAATGCCAAGCCGTCATGGGGAAACTCTCACCTTAGCCAATCATGGGCTACTTTGTCCAGGCCATTCAGTTCAAAGCCTGCTGGGAATGATGTAATTGGTATTGACTTGGGTACCACCAATTCTTGTGTTTCTGTCATGGAAGGGAAGAATCCAAAAGTTATTGAAAATTCAGAAGGTGCAAGAACCACACCGTCCGTGGTTGCTTTCAATCAGAAGGGCGAGCTACTTGTAGGAACACCAGCAAAGAGACAGGCAGTGACAAATCCAACGAACACTGTGTTTGGAACCAAACGTCTGATTGGTAGACGCTTTGATGATCCTCAGACACAGAAGGAAATGAAGATGGTGCCATATAAAATAGTCAGAGCTCCAAATGGAGATGCTTGGGTTGAAGCAAACGGACAGCAGTACTCACCGAGTCAGATTGGTGCTTTTGTTCTAACAAAGATGAAGGAAACTGCTGAGGCCTACCTTGGTAAGAGCGTGTCTAAGGCTGTGATCACTGTTCCAGCTTATTTCAACGATGCACAGAGACAGGCAACAAAGGATGCTGGCAGGATTGCTGGTTTGGATGTTCTTAGAATTATCAACGAGCCCACTGCTGCTGCACTTTCTTATGGAATGAACAATAAGGAGGGTCTAATTGCTGTTTTTGATCTTGGTGGTGGCACATTCGATGTTTCCATCTTGGAGATATCCAATGGTGTTTTTGAGGTGAAATCAACAAATGGTGACACATTCTTAGGTGGAGAGGATTTTGACAATGCTCTTTTGGACTTCCTAGTGAGCGAGTTCAAACGAACTGAGGGAATTGACCTTACCAAGGACAAGCTTGCCTTGCAGAGGCTTAGAGAAGCTGCAGAAAAGGCAAAGATTGAACTATCATCTACATCACAGACTGAGATTAACCTGCCATTTATCACTGCTGATGCATCTGGTGCAAAGCATTTGAACATCACTTTGACCAGGTCGAAGTTTGAAAGCCTTGTTAATCACTTGATTGAAAGGACCAAGGCCCCATGTAAAAATTGTTTAAAGGATGCCAGTATTTCTATCAAAGATGTCGATGAAGTTCTTTTAGTTGGTGGAATGACTCGTGTACCAAAGGTGCAAGAGGTTGTCACAGAAATTTTTGGAAAGAGCCCCAGCAAAGGAGTGAACCCTGATGAAGCAGTTGCTATGGGAGCTGCAATTCAGGGTGGCATTCTTCGTGGTGATGTCAAAGAATTGCTTCTATTGGATGTTACCCCTCTATCGCTCGGTATTGAGACACTTGGGGGGATCTTTACACGGTTGATCAGTCGGAACACTACCATTCCAACTAAGAAGAGCCAGGTGTTCTCAACCGCAGCTGACAATCAGACCCAGGTGGGTATCAAGGTATTGCAAGGTGAGAGAGAAATGGCCTCTGACAACAAGCTTCTAGGCGAGTTCGAGTTAGTTGGAATTCCTCCTGCCCCAAGAGGACTGCCTCAGATTGAAGTGACATTCGACATCGATGCCAATGGTATTGTTACCGTCTCTGCAAAGGACAAGTCCACCGGTAAAGAGCAACAAATCACCATTCGATCTTCTGGAGGACTCTCAGAAGATGAAATTGAGAAAATGGTGAAAGAAGCGGAGTTGCATGCCCAGAAGGATCAAGAGAGAAAGGCTCTTATTGACATCAGAAACAGTGCAGATACTACCATATACAGCATCGAGAAGAGCTTGGGTGAATATAGGGAGAAAATACCAAGTGAGGTTGCCAAAGAAATCGAGGATGCGGTGGCAGAGTTGAGGAAGGCAATGTCAGAAGACAACATTGAAGAGATTAAGTCGAAACTTGATGCCGCCAACAAGGCTGTTTCCAAGATTGGGCAACACATGGCTGGTGGTTCCGGTGGTGGCTCCGCTTCTGGAGGATCTCAGGGTGGCGAACAAGCCCCCGAAGCCGAGTACGAAGAGGTGAAGAAATAA 2043 45.91 MATGALLRSLRRRDLASSSLAAYRSLTSNAKPSWGNSHLSQSWATLSRPFSSKPAGNDVIGIDLGTTNSCVSVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAEAYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEVKSTNGDTFLGGEDFDNALLDFLVSEFKRTEGIDLTKDKLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFESLVNHLIERTKAPCKNCLKDASISIKDVDEVLLVGGMTRVPKVQEVVTEIFGKSPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLISRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKLLGEFELVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTGKEQQITIRSSGGLSEDEIEKMVKEAELHAQKDQERKALIDIRNSADTTIYSIEKSLGEYREKIPSEVAKEIEDAVAELRKAMSEDNIEEIKSKLDAANKAVSKIGQHMAGGSGGGSASGGSQGGEQAPEAEYEEVKK 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1399820 1403923 + CmoCh16G003050.1 Cmo16g00305 399340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00305 680 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 583 658 IPR029048 -
Cmo16g00305 680 Coils Coil 611 643 - -
Cmo16g00305 680 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 431 555 IPR029047 -
Cmo16g00305 680 Gene3D - 235 415 - -
Cmo16g00305 680 Pfam Hsp70 protein 59 651 IPR013126 GO:0005524|GO:0140662
Cmo16g00305 680 ProSitePatterns Heat shock hsp70 proteins family signature 3. 386 400 IPR018181 -
Cmo16g00305 680 CDD HSPA9-like_NBD 56 431 - -
Cmo16g00305 680 ProSitePatterns Heat shock hsp70 proteins family signature 2. 245 258 IPR018181 -
Cmo16g00305 680 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 433 589 IPR029047 -
Cmo16g00305 680 Coils Coil 301 328 - -
Cmo16g00305 680 SUPERFAMILY Actin-like ATPase domain 59 239 IPR043129 -
Cmo16g00305 680 Hamap Chaperone protein DnaK [dnaK]. 56 678 IPR012725 GO:0005524|GO:0006457|GO:0051082
Cmo16g00305 680 PANTHER HEAT SHOCK 70 KDA PROTEIN, MITOCHONDRIAL 32 662 - -
Cmo16g00305 680 PRINTS 70kDa heat shock protein signature 58 71 - -
Cmo16g00305 680 PRINTS 70kDa heat shock protein signature 86 98 - -
Cmo16g00305 680 PRINTS 70kDa heat shock protein signature 109 117 - -
Cmo16g00305 680 PRINTS 70kDa heat shock protein signature 193 213 - -
Cmo16g00305 680 PRINTS 70kDa heat shock protein signature 251 261 - -
Cmo16g00305 680 PRINTS 70kDa heat shock protein signature 383 399 - -
Cmo16g00305 680 PRINTS 70kDa heat shock protein signature 414 434 - -
Cmo16g00305 680 PRINTS 70kDa heat shock protein signature 437 456 - -
Cmo16g00305 680 PRINTS 70kDa heat shock protein signature 518 534 - -
Cmo16g00305 680 ProSitePatterns Heat shock hsp70 proteins family signature 1. 62 69 IPR018181 -
Cmo16g00305 680 SUPERFAMILY Actin-like ATPase domain 240 431 IPR043129 -
Cmo16g00305 680 Gene3D Actin; Chain A, domain 4 278 365 - -
Cmo16g00305 680 Gene3D - 60 428 - -
Cmo16g00305 680 MobiDBLite consensus disorder prediction 648 680 - -
Cmo16g00305 680 Gene3D - 556 653 IPR029048 -
Cmo16g00305 680 PANTHER HEAT SHOCK PROTEIN 70KDA 32 662 IPR013126 GO:0005524|GO:0140662
Cmo16g00305 680 TIGRFAM prok_dnaK: chaperone protein DnaK 59 651 IPR012725 GO:0005524|GO:0006457|GO:0051082
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01353 Cmo-Chr15:9263256 Cmo16g00305 Cmo-Chr16:1399820 0 dispersed
Cmo16g00305 Cmo-Chr16:1399820 Cmo04g02760 Cmo-Chr4:19963206 0 dispersed
Cmo04g02123 Cmo-Chr4:13928946 Cmo16g00305 Cmo-Chr16:1399820 0 transposed
Cmo09g01125 Cmo-Chr9:6416327 Cmo16g00305 Cmo-Chr16:1399820 0 transposed
Cmo15g01524 Cmo-Chr15:10324523 Cmo16g00305 Cmo-Chr16:1399820 0 transposed
Cmo16g00305 Cmo-Chr16:1399820 Cmo04g00444 Cmo-Chr4:2199041 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00305 K04043 - csv:101216102 1233.78