Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00312 ATGGCAGCTATACAGAATTTGTCTTCATCTCCACTCTCATCGTCTTCATCTGATTTCTTTTCGCGTTTCAACTTCAATGTCAAGAATCCGACGGTATCGTTGCCGAGAACAAGCGCCGGCGTTTGCAAGTGTGTTGCGACGTCTCAAGATTCCAAAACCGATTACAAAACAGCGGTCTCTAGAAATGCGAACATGGCCAAACTTCAAGCTGGCTATCTATTCCCTGAGGTGCGTGGTGCATTATGCTCAAGATTTTTAGTTTTCTTTTCATCTGCTAATCTCGATCTCATCGCTATTGCAAGGAGAAGGAATGCGCACTTGCTAAAGTATCCTGATGCGAAAGTAATTAGCCTTGGAATTGGTGACACCACTGAGCCTATTCCCGAGGTTATTACGTCGGCCATGGCAAAGACTCGTCTCTTCTATTATCGGCTCACTAAAGTAGTAACACTGCATTGCCATCTCATTCGCATTGAAATCAGATCACATGCATTGTCTACACTGGAGGGTTACAATGGCTACGGAGCTGAGCAGGGCGAAAAGCCAGTGCGAGCTTTAATTAGCAAAACATTTTATAGCGACCTTGGCATAGGAGAAGAAGATATCTTTGTTTCTGATGGTGCAAAATGTGACATAACACGTCTTCAGTCATTCAACTTAGTTAAATATATAAAACACCTTTGGCAATCATTTATGCCTGTCATCTTGTTACTAGTGAACTTCTCTTCCCACTTTTGGCAGCTTGTTTTTGGATCCAATGTGTCGATGGCAGTGCAAGACCCATCATACCCGAATTTAGATAATATATTTGAGACCAGTACTTTTGTTACTCCATTCTCTCTCTTTTTGGATTATGCTTATGTGGACTCGAGTGTCATCTTGGGGCAGACTGGACTGTACCAAAAGGATGTTGAAAAGTATGGCAATATTGAATACATAAGGTGTACTCCAGAAAATGGATTTTTCCCTGACTTATCCAAGGTTTCCCGGACAGATATCATATTTTTCTGTTCACCAAACAATCCTACCGGCTCTTCTGCAACTAGGGAACAGTTGACCCAACTGGTGGAGTTTGCTAAAATGAACGGGTCAATTATAGTCTATGATTCTGCATATGCAATGTATATATCAGACGATAATCCAAAATCTATCTTCGAAATTCCTGGAGCAAAGGAGGTTGCAATTGAGACATCATCATTTAGCAAATACGCTGGATTTACTGGAGTTCGTCTTGGTTGGACTGTTGTTCCTAAGGAACTCTTGTTTTCTGATGGATTTCCAGTTGCTAAAGATTTCAACCGCATTGTTTCTACTTGCTTCAACGGTGCATCTAACATTGCTCAAGCTGGAGGCCTGGCTTGTCTTTCACCAGAAGGCCTTGAGGCTATGCGTGGGGTTATCGGGTTTTACAAAGAAAATACTAGTATCATAATGGACACATTTAAGTCGCTTGGATATAACGTGTATGGAGGGAAGAATGCACCGTACGTGTGGGTTAGTTTCCCCGGCCGGAGTTCGTGGGATGTATTTGCTGAGATGCTGGAGAAAACACACGTCGTGACAACCCCCGGAAGTGGTTTCGGACCCGGAGGTGAAGGATTTATCAGGGTAAGTGCTTTTGGTCACAGGGAAAATGTTTTGGAAGCCTGCAGAAGATTCAAGCAGCTATACAAGACTAGATCTTGGTACCAGTCCATAACGATCAAAGTGAATCGTGAGAGGGAAGATTTCGGGAAACTCTTCTTGGCAAACGGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACNCCGAATGGATGGTTTTATGTCTATTACCTGTTCTTCCTCCCGAGTTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATCTATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAAACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATCGGTATAAAGCGAACAAAGGAAGGTACAACTAGTGACTTGAATCCCCTGATATTGCAGCATACTTAA 2412 42.45 MAAIQNLSSSPLSSSSSDFFSRFNFNVKNPTVSLPRTSAGVCKCVATSQDSKTDYKTAVSRNANMAKLQAGYLFPEVRGALCSRFLVFFSSANLDLIAIARRRNAHLLKYPDAKVISLGIGDTTEPIPEVITSAMAKTRLFYYRLTKVVTLHCHLIRIEIRSHALSTLEGYNGYGAEQGEKPVRALISKTFYSDLGIGEEDIFVSDGAKCDITRLQSFNLVKYIKHLWQSFMPVILLLVNFSSHFWQLVFGSNVSMAVQDPSYPNLDNIFETSTFVTPFSLFLDYAYVDSSVILGQTGLYQKDVEKYGNIEYIRCTPENGFFPDLSKVSRTDIIFFCSPNNPTGSSATREQLTQLVEFAKMNGSIIVYDSAYAMYISDDNPKSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVVPKELLFSDGFPVAKDFNRIVSTCFNGASNIAQAGGLACLSPEGLEAMRGVIGFYKENTSIIMDTFKSLGYNVYGGKNAPYVWVSFPGRSSWDVFAEMLEKTHVVTTPGSGFGPGGEGFIRVSAFGHRENVLEACRRFKQLYKTRSWYQSITIKVNREREDFGKLFLANGSLTFITSMWIASRNRNRAFPDXEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIGIKRTKEGTTSDLNPLILQHT 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1429347 1436135 - CmoCh16G003120.1 Cmo16g00312 399347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00312 803 Gene3D Aspartate Aminotransferase, domain 1 458 554 IPR015422 GO:0003824
Cmo16g00312 803 Gene3D - 162 218 IPR015421 GO:0003824
Cmo16g00312 803 Gene3D - 286 457 IPR015421 GO:0003824
Cmo16g00312 803 Pfam RNA polymerase Rpb1, domain 2 719 767 IPR000722 GO:0003677|GO:0003899|GO:0006351
Cmo16g00312 803 PANTHER AMINOTRANSFERASE 160 217 IPR019942 GO:0008483
Cmo16g00312 803 PANTHER AMINOTRANSFERASE 11 138 IPR019942 GO:0008483
Cmo16g00312 803 PANTHER AMINOTRANSFERASE 247 558 IPR019942 GO:0008483
Cmo16g00312 803 Pfam RNA polymerase Rpb1, domain 1 543 717 IPR007080 GO:0003677|GO:0003899|GO:0006351
Cmo16g00312 803 PANTHER LL-DIAMINOPIMELATE AMINOTRANSFERASE, CHLOROPLASTIC 247 558 - -
Cmo16g00312 803 Pfam Aminotransferase class I and II 311 553 IPR004839 GO:0009058|GO:0030170
Cmo16g00312 803 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 596 781 - -
Cmo16g00312 803 Gene3D Aspartate Aminotransferase, domain 1 62 156 IPR015422 GO:0003824
Cmo16g00312 803 Gene3D - 707 802 - -
Cmo16g00312 803 PANTHER LL-DIAMINOPIMELATE AMINOTRANSFERASE, CHLOROPLASTIC 11 138 - -
Cmo16g00312 803 SMART rpolaneu7 608 803 IPR006592 GO:0003677|GO:0003899|GO:0006351
Cmo16g00312 803 CDD AAT_like 116 555 - -
Cmo16g00312 803 PANTHER LL-DIAMINOPIMELATE AMINOTRANSFERASE, CHLOROPLASTIC 160 217 - -
Cmo16g00312 803 SUPERFAMILY PLP-dependent transferases 94 553 IPR015424 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00312 K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] - csv:101217452 761.911
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00047 Cmo-Chr15:286951 Cmo16g00312 Cmo-Chr16:1429347 1.12E-160 dispersed
Cmo16g00312 Cmo-Chr16:1429347 Cmo04g00857 Cmo-Chr4:4278073 1.48E-12 dispersed
Cmo13g00306 Cmo-Chr13:3317955 Cmo16g00312 Cmo-Chr16:1429347 6.81E-32 transposed
Cmo16g00312 Cmo-Chr16:1429347 Cmo04g00449 Cmo-Chr4:2232114 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g811 . Blo03g00048 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed07g1158 . Cmo16g00312 . . . . . . Bhi11g01088 Tan01g0587 Cmetu07g0545 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001245 2 2 1 0 0 0 0 3 3 0 4 5 9 5 0 5 4 1 0 5 0 0 0 1 1 3 1 1 1 2 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00312 Cmo_Chr16 FPKM 16.967592 16.801067 18.3953 16.799515 20.121586 18.474781 20.130148 21.399 26.059526 23.92662