Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00313 ATGGTGAAGATACTTACATTTTGTAACGAACATGCTCAGGTGACTAAAATGGATCTTGAGACAGAAAATAGGGTAGCTGCAATTCTAATGAGAGAGGCAGCAGAATTGCGTCGCCAAGCTGAGAAAGAAGGTGTGGATGCCTATCTACGGCATCCTAAAGTCAGGGGTCGTCCTAATTCTCGTTTCCTGACTGCAACTGTTCTTGGCGTACAACAAGCAAATAAAGCTGTCGAAGTGAATGAAATGTGGAGAGTTCGTCAAAAGGAGCTCGAACTGGATGACAGGCTTAGAGGCAAGTCAAGAGAGGGGAACAATGGCTCTGGGAGCCGCAGGGGCTTCAAACCATCCACAGATTTCAGTCATGACATTCCCAGTAGTTCAAGCCCATCTAGTAAAAGAGATTATGAGGATTGCGACTTAAGGGAGAATCAAGGATTAAAAGATGAAGAACTTGAGGAATTTTTACACTCAAGGACTAAGCGTGGGAGAGGCGCAGTTGGGTCACGAATGGATGAAACTGGTCCATACCTTGCCCCTTGTAATGAAACATATTTGAGTTGGCCAACAAGCTCCAATGTTACAGATAGACATGTTGTTTATGGGCCAGAGAAGCCTAATTCTCTGAGGTCAGATGGCTCTTCCGAAGAGGACTCAGACAGTGATCGGCGAAAACGGTCGAAAAGAAGTTCACACAAGCAGCATAGCAAGGACCATAAGTCAAATCACAAATCCGAGAAAAGGAGGAAAGAATCAAAGAAAAGCAAACGCCGCAAATAA 777 44.66 MVKILTFCNEHAQVTKMDLETENRVAAILMREAAELRRQAEKEGVDAYLRHPKVRGRPNSRFLTATVLGVQQANKAVEVNEMWRVRQKELELDDRLRGKSREGNNGSGSRRGFKPSTDFSHDIPSSSSPSSKRDYEDCDLRENQGLKDEELEEFLHSRTKRGRGAVGSRMDETGPYLAPCNETYLSWPTSSNVTDRHVVYGPEKPNSLRSDGSSEEDSDSDRRKRSKRSSHKQHSKDHKSNHKSEKRRKESKKSKRRK 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1438496 1440171 + CmoCh16G003130.1 Cmo16g00313 399348

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00313 258 MobiDBLite consensus disorder prediction 94 137 - -
Cmo16g00313 258 MobiDBLite consensus disorder prediction 209 224 - -
Cmo16g00313 258 Coils Coil 19 39 - -
Cmo16g00313 258 MobiDBLite consensus disorder prediction 225 258 - -
Cmo16g00313 258 PANTHER OS08G0192200 PROTEIN 17 257 - -
Cmo16g00313 258 MobiDBLite consensus disorder prediction 184 258 - -
Cmo16g00313 258 PANTHER OS08G0192200 PROTEIN 17 257 - -
Cmo16g00313 258 MobiDBLite consensus disorder prediction 102 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00313 - - - csv:101214014 305.449
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g810 Blo02g00911 . . . . . Bma05g00632 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo16g00313 . . . . Cpe14g00244 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009349 0 2 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 4 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00313 Cmo_Chr16 FPKM 3.958732 4.531589 4.991463 4.644657 7.966014 7.928 8.754342 9.74319 9.084562 9.779045