Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00314 ATGGCGGGAAGGGAGAGCCACCATCATCATCACCAAGCGAAGCAAGTTCCTCTTTCCCCCTTACTCTCTCTTATCTGCTTCGTTTCCATTTTTCTTGCTCTCTCGGTATTCCGCAGAACCTCCGTGACACCACAACCGCATCAGAGCTTCCAATTCATCAATGGCGTTAGATCCGGGAGATCGGACGCGGCTGGGGGCAGCTCGTGCGATTATTCTGATGGAAGTTGGTTCCACGACCCGAATTTGAGAACCTCCAGGTACAATCACACCTGCAAAGAGATTTTCAAAGGCTGGAACTGCTATGTGGCGAATAAATCCAATGCTCTCGAAATCATTCATTGGCATTGGGAGCCGAAGCAATGTGATCTTCCGCACTTTGATCCGGTTTCCTTTCTTGAGAAGTTTAGAAATACTAACATCGGGTTTGTCGGCGACTCCTTAAATCGTAACATGTTTGTTTCACTCTTTTGTTCTCTGAAACATGTGCCGGGTGAAGTGAAGAAATGGCGCCCAGCTGGTGCAGATCGTGGATTCTCATTTCTGAAGTACAATCTTACTGTTGCATATCATAGAACAAATATTCTGGCACGATATGCTTGGTGGTCAGCTAATGCTGACGGTGGTAAATTGGAATCTCTGGGTTATAAAGAAGGATACAGAGTTGATGTTGACATTCCAGAAAGTTCATGGATCGAGGCTCCAAATTTTCATGACATCTTAATCTTTAACACAGGACATTGGTGGTGGGCGCCATCAAAATTTGACCCTGTAAAATCACCCATGCTGTTTTTTGAGAAAGGTCTCCCTGTCATCCCTCCGGTACCTCCTGACGTTGGCTTAGACATGGTTTTGAAACATATGATATCATACGTGGAGAAAATAATGCCACCCAGTGCAATCAAATTCTTTCGTACGCAATCACCTAGGCATTTTGAAGGAGGTGAATGGTACCAAGGTGGTTCTTGCCAGCGGCAGCAGCCTCTATCTCCGCAACAGGCTGAGGATCTGTTCGCACCGAGGAATAACGGAACCAATGTCGAGGTTCGTCTCGTAAACGAGCACCTCGTCAAGGCCCTCAATGGAACTAGTTTCCATATTTTGAACATAACATCCATGAGTGAGTTGAGAGCAGATGCACATCCTGCCTCAGCTGGTGGAAAGAAGCACGACGATTGTATGCATTGGTGCTTGTCGGGACTCACCGACACGTGGAATGACTTGTTCGTACAGCATCTATACGACATAAGAAGTTAG 1254 46.33 MAGRESHHHHHQAKQVPLSPLLSLICFVSIFLALSVFRRTSVTPQPHQSFQFINGVRSGRSDAAGGSSCDYSDGSWFHDPNLRTSRYNHTCKEIFKGWNCYVANKSNALEIIHWHWEPKQCDLPHFDPVSFLEKFRNTNIGFVGDSLNRNMFVSLFCSLKHVPGEVKKWRPAGADRGFSFLKYNLTVAYHRTNILARYAWWSANADGGKLESLGYKEGYRVDVDIPESSWIEAPNFHDILIFNTGHWWWAPSKFDPVKSPMLFFEKGLPVIPPVPPDVGLDMVLKHMISYVEKIMPPSAIKFFRTQSPRHFEGGEWYQGGSCQRQQPLSPQQAEDLFAPRNNGTNVEVRLVNEHLVKALNGTSFHILNITSMSELRADAHPASAGGKKHDDCMHWCLSGLTDTWNDLFVQHLYDIRS 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1440956 1444862 + CmoCh16G003140.1 Cmo16g00314 399349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00314 417 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 13 6 416 IPR029968 -
Cmo16g00314 417 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 123 410 IPR026057 GO:0016740
Cmo16g00314 417 Pfam PMR5 N terminal Domain 68 122 IPR025846 -
Cmo16g00314 417 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 6 416 IPR029962 GO:0016413
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00314 - - - csv:101217679 797.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00314 Cmo-Chr16:1440956 Cmo07g00868 Cmo-Chr7:4095428 1.69E-44 dispersed
Cmo19g00515 Cmo-Chr19:6078395 Cmo16g00314 Cmo-Chr16:1440956 5.39E-105 transposed
Cmo16g00314 Cmo-Chr16:1440956 Cmo04g00452 Cmo-Chr4:2249195 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g807 . . . . . . Bma05g00633 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00456 . . . . Cmo16g00314 . . . . Cpe14g00245 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008103 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00314 Cmo_Chr16 FPKM 0.677871 0.0 1.008998 1.088301 1.321101 1.024339 2.341881 1.460634 2.536796 2.537732