Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00317 ATGTTGAAGAAATTACCGGGTCGGAGCAGCAGGTCGAAAGGCATCAAAGTGAAGCATATTCTGCAGATTGTTCTGTTGGTTGGTGTTTGCTTTTGGTTAGTTTATCAGGTGAAGCGCTCCCATGACAAGAAGAAAGGATTCGACCAGAAAGATAATGAAATAACGATAAGAACTCGGGATGGAGGGGATGTTTTGAAATTTGGAAGGAAAGAGCTTCACCCACATGTTGAGGAAGTTCATCCCGACTCGAAGCAAGAGGACGATGAGGAGGAAGACTCAAAGCATGAGGTTGAAGAGGGACATGAAGAACTGAAAAACGAGGCAGTCGATGAGGAGGAAGACTCAAAGCATGAGGCAGAAGAGGGACGTGAAGAACTGAAAAATGAGGCAGTCGATGAGGAGGAAGACTCGAAGCATGAGGTAGAAGAGGCACGTGAAGAACTGAAAAACGAGGCAGTCGATGAGGAGGAAGACTCGAAGCATGAGGTAGAAGAGGCACGTGAAGAACTGAAAAACGAGGCAGTCGATGAGGAGGAAGACTCGAAGCATGAGGTAGAAGAGGCACGTGAAGAACTGAAAAACGAGGCAGTCGATGAGGAGGAAGACTCGAAGCATGAGGTAGAAGAGGCACGTGAAGAACTGAAAAACGAGGCAGTCGATGAGGAGGAAGACTCGAAGCATGAGGTAGAAGAGGCACGTGAAGAACTGAAAAATGAGGCAGTCGATGAGGAGGAAGACTCGAAGCATGAGGTAGAAGAGGCACGTGAAGAACTGAAAAACGAGGCAGTCGATGAGGAGGAAGACTCGAAGCATGAGGTAGAAGAGGCACGTGAAGAACTGAAAAACGAGGCAGTCGATGAGGAGGAAGACTCGAAGCATGAGGTAGAAGAGGCACGTGAAGAACTGAAAAACGAGGCAGTCGATGAGGAGGAAGACTCGAAGCATGAGGTAGAAGAGGCACGTGAAGAACTGAAAAACGAGGCAGTCGATGAGGAGGAAGACTCGAAGCATGAGGTAGAAGAGGCACGTGAAGAACTGAAAAACGAGTCGGTCAATGAGGAGGATGAAGGAAGCAAGCATGAAGATGAAGAGGAGACGGATGATGATGGGAGAGGAGGTGGCGATGACGATATGAATGAGAATGATCGAGAGAAGTCCGATAATGAATCCGATCATGAAGGTGAGAATGCGGACGGTGAGAGATTGAAAGAAGACGGTGATGAGGAGGCAGGAGGAGATGAGAATTCTTCTGATGAGCAGGAGAACGACAATGGTGATTCGATCACTCATGAGGCACGGGAGGAAAACTACAAGGGGGACGATGCATCTAGTGCCGTGGCCCATGACGACCACTCTACCACCTCGACAGACGACGTGAGTTTAGAAAGTTCAAGTGAGAACGCAGAGCTGAATAACAAAGAACAGAACAGTGAATCAAATGAAACCGAAGCGATTCGTTCACGGTTAACCGAGGAAGTAGATAAAGTGGCTAACAATGAAACTTCAACGAACGAGAATTTCAGTAATGTGAAGCTCAGCGAAAACACGTCCTTCCCTACTGATGGTTCAGTTCAAGATTCAATCCCGACCGCTCAATCCGATGATCAACCTGAATTGAGCAATAATACATCCTCTGCAACTACTGATACAAGTAATGTAGAGAATGCAGATTCTTCTCAGCAGAAGGGAACAGAAATTGATTTGAATCATACTCAAAGTGAAATCATAGACAATTTGGGTGATAAGAATGAAACATCTCTTCAGTCTATACTCACAGATATGAATGACAAGGTTTTGGAGAACAGCACTTCTGAATCTCAGCCAAATGAGGTTGAAGGCGAAACCCGAAACATCACGAGTAAGCCAGATCTTACTGTTTCAGACGACGAGACATCCGAAACGAAGAAAGACAACAAAACAAACGAACCGGAGAATGTCTTACCGACCATGATACCCGAGGAGAATAGTGAAGCTACTCATAACGACAAGTCGGAAGACGATGGCGAATCCAACGACGATAGCTCCAACTCGACAAACCACATTGACGACCCAGTTCAAGACGATCATTTTGATTCTAACGACTCCCATGTAACCGAACGGGTGGATCTAGATACGCTTCCAGACATCGAGATTGACAATAGTGAAGAGACTGCAGCAGAATGA 2163 46.28 MLKKLPGRSSRSKGIKVKHILQIVLLVGVCFWLVYQVKRSHDKKKGFDQKDNEITIRTRDGGDVLKFGRKELHPHVEEVHPDSKQEDDEEEDSKHEVEEGHEELKNEAVDEEEDSKHEAEEGREELKNEAVDEEEDSKHEVEEAREELKNEAVDEEEDSKHEVEEAREELKNEAVDEEEDSKHEVEEAREELKNEAVDEEEDSKHEVEEAREELKNEAVDEEEDSKHEVEEAREELKNEAVDEEEDSKHEVEEAREELKNEAVDEEEDSKHEVEEAREELKNEAVDEEEDSKHEVEEAREELKNEAVDEEEDSKHEVEEAREELKNEAVDEEEDSKHEVEEAREELKNESVNEEDEGSKHEDEEETDDDGRGGGDDDMNENDREKSDNESDHEGENADGERLKEDGDEEAGGDENSSDEQENDNGDSITHEAREENYKGDDASSAVAHDDHSTTSTDDVSLESSSENAELNNKEQNSESNETEAIRSRLTEEVDKVANNETSTNENFSNVKLSENTSFPTDGSVQDSIPTAQSDDQPELSNNTSSATTDTSNVENADSSQQKGTEIDLNHTQSEIIDNLGDKNETSLQSILTDMNDKVLENSTSESQPNEVEGETRNITSKPDLTVSDDETSETKKDNKTNEPENVLPTMIPEENSEATHNDKSEDDGESNDDSSNSTNHIDDPVQDDHFDSNDSHVTERVDLDTLPDIEIDNSEETAAE 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1451152 1453314 + CmoCh16G003170.1 Cmo16g00317 399352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00317 720 Coils Coil 94 363 - -
Cmo16g00317 720 MobiDBLite consensus disorder prediction 58 90 - -
Cmo16g00317 720 MobiDBLite consensus disorder prediction 682 707 - -
Cmo16g00317 720 MobiDBLite consensus disorder prediction 376 408 - -
Cmo16g00317 720 Coils Coil 472 492 - -
Cmo16g00317 720 MobiDBLite consensus disorder prediction 58 720 - -
Cmo16g00317 720 PANTHER MYB-LIKE PROTEIN X 1 213 - -
Cmo16g00317 720 PANTHER MYB-LIKE PROTEIN X 324 720 - -
Cmo16g00317 720 MobiDBLite consensus disorder prediction 457 478 - -
Cmo16g00317 720 MobiDBLite consensus disorder prediction 356 375 - -
Cmo16g00317 720 MobiDBLite consensus disorder prediction 496 625 - -
Cmo16g00317 720 PANTHER MYB-LIKE PROTEIN X 324 720 - -
Cmo16g00317 720 PANTHER MYB-LIKE PROTEIN X 1 213 - -
Cmo16g00317 720 MobiDBLite consensus disorder prediction 339 355 - -
Cmo16g00317 720 MobiDBLite consensus disorder prediction 626 642 - -
Cmo16g00317 720 MobiDBLite consensus disorder prediction 423 456 - -
Cmo16g00317 720 MobiDBLite consensus disorder prediction 479 495 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00317 - - - cmos:111430711 1232.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00317 Cmo-Chr16:1451152 Cmo03g00915 Cmo-Chr3:7006461 5.76E-18 wgd
Cmo16g00317 Cmo-Chr16:1451152 Cmo04g00455 Cmo-Chr4:2261257 8.40E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g787 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1052 Cone10ag1070 . . . . . . . . . . . . Sed07g1153 . Cmo16g00317 . . . . Cpe14g00247 Cpe01g00381 Bhi11g01093 Tan01g0597 Cmetu07g1866 . Hepe07g0387 Mch10g0400 . . . . . . . . . . . Cme07g02218
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001422 2 2 3 1 1 2 4 2 2 3 2 2 4 1 0 3 2 4 4 2 1 2 2 2 2 2 2 5 3 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00317 Cmo_Chr16 FPKM 0.34127 0.0 0.331829 0.0 1.046733 0.897833 2.073541 0.566732 0.295992 1.176799