Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00319 ATGTTCGTACAGCAGATTCATTTCTTGTCGCAAATATTCACTTGTACCATACCATATCAAAATGGACTGGCGCCAAGCCTCCTCAATTTCTCCCCATCTTCCACCACATTTCCCATATCCGCCCAAATCCGTTCGAATTCTCAGTTGCCTCTTAAAGACTCTCTTCTGTGGATCAATCGTACTGCGCTCTGCGGTGAATTGTCGGTTGACGATGTTGGGAAACGGGTTCGGCTGTGTGGTTGGGTCGCCCTGCATAGGGTTCACGGTGGTCTAACGTTTCTCAATCTTCGAGACCACAGTGGTATTGTTCAGGTGACTACGCTCCCCAACGAATTTCCAGATGCTCATTCGACTATTAATGACTTGCGGCTTGAGCATGTTGTTGCTGTAGAAGGCACTGTACGGTCTCGGCCTGGCGATTCAGTTAATGTAAAAATGAAAACAGGCTTGATAGAGATTGAGACGCCAATCCTTTCTAGATCTACTCCAGAAGGTGCTCGGGATTATCTAGTGCCGTCTAGAGTTCAGGCAGAAGCGAAGTTCGGTTATTTATTGGAGGCACTAGACATGGGTGCACCCCCTCATGGGGGCATTGCTTATGGGTTGGACAGATTAGTCATGTTATTGGCAGAGGCAAATTCCATTAGGGATGTCATAGCTTTCCCAAAGACAACAACAGCACAATGTGCCCTCACAAAAGCTCCTTCAGAAGTAGATCCCCAACAACTCAAGGATTTATCATATCAGAACCAATAA 756 46.56 MFVQQIHFLSQIFTCTIPYQNGLAPSLLNFSPSSTTFPISAQIRSNSQLPLKDSLLWINRTALCGELSVDDVGKRVRLCGWVALHRVHGGLTFLNLRDHSGIVQVTTLPNEFPDAHSTINDLRLEHVVAVEGTVRSRPGDSVNVKMKTGLIEIETPILSRSTPEGARDYLVPSRVQAEAKFGYLLEALDMGAPPHGGIAYGLDRLVMLLAEANSIRDVIAFPKTTTAQCALTKAPSEVDPQQLKDLSYQNQ 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1458000 1462345 - CmoCh16G003190.1 Cmo16g00319 399354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00319 251 PANTHER ASPARTYL/LYSYL-TRNA SYNTHETASE 43 154 - -
Cmo16g00319 251 PANTHER ASPARTYL/LYSYL-TRNA SYNTHETASE 150 176 - -
Cmo16g00319 251 Pfam tRNA synthetases class II (D, K and N) 176 225 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cmo16g00319 251 SUPERFAMILY Class II aaRS and biotin synthetases 175 248 IPR045864 -
Cmo16g00319 251 PANTHER ASPARTYL/LYSYL-TRNA SYNTHETASE 175 248 - -
Cmo16g00319 251 PANTHER ASPARTATE--TRNA LIGASE, MITOCHONDRIAL 43 154 IPR004524 GO:0005524|GO:0016874
Cmo16g00319 251 PANTHER ASPARTATE--TRNA LIGASE, MITOCHONDRIAL 150 176 IPR004524 GO:0005524|GO:0016874
Cmo16g00319 251 PANTHER ASPARTATE--TRNA LIGASE, MITOCHONDRIAL 175 248 IPR004524 GO:0005524|GO:0016874
Cmo16g00319 251 CDD EcAspRS_like_N 60 163 - -
Cmo16g00319 251 Pfam OB-fold nucleic acid binding domain 76 145 IPR004365 GO:0003676
Cmo16g00319 251 Gene3D Bira Bifunctional Protein; Domain 2 173 251 IPR045864 -
Cmo16g00319 251 SUPERFAMILY Nucleic acid-binding proteins 60 154 IPR012340 -
Cmo16g00319 251 Gene3D - 53 161 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00319 K01876 DARS2, aspS; aspartyl-tRNA synthetase [EC:6.1.1.12] - csv:101202872 214.157
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00458 Cmo16g00319 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00319 Cmo-Chr16:1458000 Cmo04g00458 Cmo-Chr4:2271230 7.50E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g777 . Blo03g00057 Bda06g01152 . Bpe07g00295 . . Bma12g00306 . . . . . . . . . . . . . . . . Cla10g00957 Cam10g0980 Cec10g1011 Cco10g0974 Clacu10g1002 Cmu10g1784 Cre10g1158 . . Cone3ag1050 Cone10ag1066 . . . . . . . . . . . . Sed07g1150 Cmo04g00458 Cmo16g00319 . . . . Cpe14g00249 Cpe01g00384 Bhi11g01096 Tan01g0600 Cmetu07g2217 . . Mch10g0404 . . . . . . . . Lsi03g01002 . . Cme07g02215
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0050826 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00319 Cmo_Chr16 FPKM 81.894516 98.582474 76.518921 82.369301 0.146914 0.477328 0.0 6.271254 8.794515 6.979012