Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00320 ATGGCGCTGCCGTCTAACAGATCGTCTTCACCGTCGATGGTGACCGGAAGAACAAGCCCTATTTCGAGAAATTCCGAAATCGGCAACCCTGTCTACCGGAGCTTCTCCAGTAATCCGTTTTCGAAGCCGTCGATCGCCACCAGTTTGAGAAGCTTGAATCCGATCACTCCGGCGAATAGTCCCTCCGATTATCCTCCACAAAGGAATTCTGTGAGCAGAGAAATTCTATTTACTTCTCGAGACAATGAGGATAAAGAAAATGGGAAAGATCAGAGTCCGAAACTCACCAGAGTCCGTTCGCCGACGGTCGGAAAATCGATGAAGAATTTCATGTCGTCTACAATTTCCGCCGCCTCCAAGATTGCCGTCTCTCCGAAGAAGAAGATTCTGGGCGATCGGAACGAGCCAGTTCGTTCGTCTCTTTCATTTTCCGGCATGAAAAGCTCTTCACTCAACTCGATGAATCCAACTCCTGAGGCATCAATGGCATTTGAATCCGATACGAACCCTCCAATGCCTCTAATTTCAAATCCTAAATCAACAAAAACAGTGAGATTCGGTGGTGTTGAGGTCATTTCTGGTTCGTACGAGGATTCAGAATCTACTTACCGATATGATTTGAACCCGGAGTTGGTAACAATGGCGGCTGTAACCGATACGAAGTCTGGAATTGGTCCGATTCCTAAATCTGCCATTGCAGCAGCATCTTCCAAATCTTCTAAAACTGTGACATTCGGTGGTTTTGAGGTTATTTCTGATTTCTGTGACGATTCGGAATACACATACCGACATGGACACGATCCGAACCCAGAAGCTGTAACAGTGGCTGTTGAGGCCAACGCAGAGCCTGAAATCGGTCCGATTTCAGATTCCGACATTGCAGCTGTAACTCCCGAAGCTTCAAAGATTATGAGATTTTCTGATTTCGAGGTTGTCTCGAACAACGCTTTAGAGTCTTCGGTTAACAGTAATTTAACTGAAGAAGTGGATTCTGTTAATCTTGACCCAAGTTTTAACATCAGTCCAGTTTCTTCTCCAATGATAGCACCTATGGATGCTGATCCCATAATCACTCCTTATGATCCTAAAACTAATTATCTGTCGCCAAGGCCACAGTTCCTCCATTACAACCCAAACCGAAGAATCAATCGACCAGACGGTAGGTTTGAGGAACTCTTTTCCTCTTCGGAGGAGATTGACTGTGAAGATCCACAGAAAGAATCTGATGAAGTTTCTTCCAATGAATCACAGATGAAAGAAGAAGAAAAAGAAGAAGAAGAGGTTAATGTTTCTGAACAAGGCCCCACGGAAGTTAAAAAGTCGTCGAAGCTGTCTAGGATACTCAAGATCAGTTCTCTGCTTTTGATTTTGTTTACTGCTTGCTTGTCGATTTGTGTTGTGAATGTCCATGATCCAACTATCTTCCAAAGATCAACCATGTTAACAACGGGGGATCAGTCCGAAATTTTCGAGTCTGCTAAAACGAATTTCAATGTGTTGGTTGAGAAACTTGAGATTTGGCATGCGAATTCCATCTCTTTTATTTCTGATGTGGTTTTCAACTTCAGAGGAGGGCCGCCATTGATATTTCTGAACCAAACTGAGTACGGGGATGTCAATAAGGATGAGCAGTGTCTTGTATTATCTAATCAGAACGTGTGGGAAGAAGAAAACAATTTGATGAATGCAATGGAAGCCATGAAGGACAGAGAAGGTCAGAATAAAGAGCGACAAGAACAAGAAGAAGATGCACAAGAGGTTGAAGCCATAAAGGTGAGAGAAATTGGCATCCAAACTGTTGAAATAGAATCTCAGAATGAAGAAGCAGAAGAAGAATCGTTTCAAGAGATTGAGGCCAGAACCAATGATTCAGCAGACATTGAAGAAGAGAATGACGAGGCTTCTGAAGAATCATTACAAGAAATCATTGAACATATTGAGGGAGAAGGTCAGAATATAGAGGGACAAGAACAGCAAGAAGAAGCACAAGATACCGAAGCCATGAAGGTGAGAGAAATTGGAATCGAAACTGTTGAAAGAGAATCTCAGAACGAAGAAGTAGAAGAAGAACCGTTTCAAAAGGCTGAAGCCAAAGCCAATGATCAGAAAGACAGCGAAGAAGAGAATGACGAGGCTTCTGAAGAATCATTACTAGAAATCGTTGAAGAAGAATTCATTCAAGAGAAAACCGTAGAGAATTTCAAAGCTTCTTCATCGTCTGATTTTAAATTACATGATCAAATTGAACAAGCAGCAGCAACAGGGGAAACACAGGAAGAAACAAACACAGAATTTCAATACCAGTCACCTCCAGTTTCTTCTCCTCCATCTGAACATCAATCTGATGTTGAAGAAGAAAATGGCGGCAAAATCGTCGATCTCATCAGAACAGCCACCGGAATCTCTCGTGATTTCACACAGAACACGGCTGCAATAATATCTGCAATACTGCTAGGTTTATTTCTTATTATACCTGCAGGACTGATTTATGCAAGAAAATCAGGCTCAAGACGAACAACATCCACAGCGGCCATTGCGGAAGAGCAGCAAGAGGAGCCATTGCTGAAAGATAAGAAGACGAACCAGAGTCTGGTGGAAGAGGAAGAAGAAGAAGAAGCACCGGATGATGACGACGATGATATGGCCGGAGAATTTTGCTCTTCTGAAACGAGTAGTTTTTTCCAGTACAGCAGCGTGAGAGAAGGAGAAACAGAAACAGCAAAAAGATCGAATGAATTTCAAAGCCATAGCCATGTGAGGAGGGAGAATTCAAGAAGAGAATCCATCGCTGAAGCAGCGACCAGATCGAGTGAAGTTCAGAGCCATAGCCATGGGAGGAGGAAGATTAGGATGGAGAATTCACGAGAATCCATGGCTTCTTCTTCTTTGGATGATTACTCAGTGTCCTCTTCGGCTTCTCCATCTTATGGGCGTTTCACAACTTATGAGAAGATCCCAATCAAGCATAAAAATGGAGACGAAGAGATCGTGACTCCCGTCAGACGCTCTAGTAGAATTAGAAATCGACACAATAATAGGTTTTACGCGATAAATCTTCTCGCCGAATATTCTTCTTCTGCTTTTCTTGTAAAATCCACCATTGTTTGTTACCGCTGTTCCAAACTCGGCGGACAATACTATTCGAAGGCTATCCAAGGCCTGTTGCTGAAGAACGACGAAGATAGCTGCTGA 3192 42.95 MALPSNRSSSPSMVTGRTSPISRNSEIGNPVYRSFSSNPFSKPSIATSLRSLNPITPANSPSDYPPQRNSVSREILFTSRDNEDKENGKDQSPKLTRVRSPTVGKSMKNFMSSTISAASKIAVSPKKKILGDRNEPVRSSLSFSGMKSSSLNSMNPTPEASMAFESDTNPPMPLISNPKSTKTVRFGGVEVISGSYEDSESTYRYDLNPELVTMAAVTDTKSGIGPIPKSAIAAASSKSSKTVTFGGFEVISDFCDDSEYTYRHGHDPNPEAVTVAVEANAEPEIGPISDSDIAAVTPEASKIMRFSDFEVVSNNALESSVNSNLTEEVDSVNLDPSFNISPVSSPMIAPMDADPIITPYDPKTNYLSPRPQFLHYNPNRRINRPDGRFEELFSSSEEIDCEDPQKESDEVSSNESQMKEEEKEEEEVNVSEQGPTEVKKSSKLSRILKISSLLLILFTACLSICVVNVHDPTIFQRSTMLTTGDQSEIFESAKTNFNVLVEKLEIWHANSISFISDVVFNFRGGPPLIFLNQTEYGDVNKDEQCLVLSNQNVWEEENNLMNAMEAMKDREGQNKERQEQEEDAQEVEAIKVREIGIQTVEIESQNEEAEEESFQEIEARTNDSADIEEENDEASEESLQEIIEHIEGEGQNIEGQEQQEEAQDTEAMKVREIGIETVERESQNEEVEEEPFQKAEAKANDQKDSEEENDEASEESLLEIVEEEFIQEKTVENFKASSSSDFKLHDQIEQAAATGETQEETNTEFQYQSPPVSSPPSEHQSDVEEENGGKIVDLIRTATGISRDFTQNTAAIISAILLGLFLIIPAGLIYARKSGSRRTTSTAAIAEEQQEEPLLKDKKTNQSLVEEEEEEEAPDDDDDDMAGEFCSSETSSFFQYSSVREGETETAKRSNEFQSHSHVRRENSRRESIAEAATRSSEVQSHSHGRRKIRMENSRESMASSSLDDYSVSSSASPSYGRFTTYEKIPIKHKNGDEEIVTPVRRSSRIRNRHNNRFYAINLLAEYSSSAFLVKSTIVCYRCSKLGGQYYSKAIQGLLLKNDEDSC 1063
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1463782 1468783 + CmoCh16G003200.1 Cmo16g00320 399355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00320 1063 MobiDBLite consensus disorder prediction 77 101 - -
Cmo16g00320 1063 MobiDBLite consensus disorder prediction 752 778 - -
Cmo16g00320 1063 Coils Coil 617 637 - -
Cmo16g00320 1063 MobiDBLite consensus disorder prediction 360 436 - -
Cmo16g00320 1063 MobiDBLite consensus disorder prediction 902 932 - -
Cmo16g00320 1063 MobiDBLite consensus disorder prediction 866 884 - -
Cmo16g00320 1063 MobiDBLite consensus disorder prediction 955 974 - -
Cmo16g00320 1063 MobiDBLite consensus disorder prediction 381 419 - -
Cmo16g00320 1063 MobiDBLite consensus disorder prediction 841 974 - -
Cmo16g00320 1063 MobiDBLite consensus disorder prediction 752 788 - -
Cmo16g00320 1063 MobiDBLite consensus disorder prediction 1 46 - -
Cmo16g00320 1063 PANTHER TRANSMEMBRANE PROTEIN 643 1010 - -
Cmo16g00320 1063 Coils Coil 695 715 - -
Cmo16g00320 1063 MobiDBLite consensus disorder prediction 940 954 - -
Cmo16g00320 1063 MobiDBLite consensus disorder prediction 662 705 - -
Cmo16g00320 1063 MobiDBLite consensus disorder prediction 129 155 - -
Cmo16g00320 1063 MobiDBLite consensus disorder prediction 885 901 - -
Cmo16g00320 1063 Coils Coil 592 612 - -
Cmo16g00320 1063 MobiDBLite consensus disorder prediction 850 865 - -
Cmo16g00320 1063 PANTHER TRANSMEMBRANE PROTEIN 643 1010 - -
Cmo16g00320 1063 PANTHER TRANSMEMBRANE PROTEIN 1 664 - -
Cmo16g00320 1063 PANTHER TRANSMEMBRANE PROTEIN 1 664 - -
Cmo16g00320 1063 MobiDBLite consensus disorder prediction 137 155 - -
Cmo16g00320 1063 MobiDBLite consensus disorder prediction 77 93 - -
Cmo16g00320 1063 MobiDBLite consensus disorder prediction 601 715 - -
Cmo16g00320 1063 Coils Coil 561 590 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00320 - - - cmax:111482876 1580.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00459 Cmo16g00320 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00320 Cmo-Chr16:1463782 Cmo04g00459 Cmo-Chr4:2280384 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g776 Blo02g00915 . . . . . . Bma12g00305 . . . . . . . . . . . . . . . . Cla10g00958 Cam10g0981 Cec10g1012 . Clacu10g1003 Cmu10g1786 Cre10g1159 . . Cone3ag1049 Cone10ag1065 . . . . . . . . . . . . Sed13g0417 Cmo04g00459 Cmo16g00320 . . . . Cpe14g00250 Cpe01g00385 Bhi11g01098 Tan01g0601 Cmetu07g1160 . Hepe07g0391 Mch10g0405 . . . . . . . . Lsi03g01003 . . Cme07g02214
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005958 3 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00320 Cmo_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0