Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00325 ATGAAATTGAGGCTGAGATCCGTGGAGTCCAAGGAGACTCTCAGAATTGAAGTTCCCGATCAATCTACCATCGAGCACCTGAAACAGACGCTCCTCCAGGCACTGTCTTCTTCCTTTTCCGCTGATTCTCTTCACCTCTCTCTCAATCGGAAGGACGAGCTTCAAGGATCGTCGCCGGAGGATTCGCTGCACTCCACTGGTATCACTTCAGGTGACCTTGTTTTCTTCACTTTTAAACCTTCCGGGTTTTCTTCTCGAGGAGGTACGTCGATTCAAGCTTCTTCACAAGATTCGTCTTCGTCGCGACCAGGAAAGGAAATTCAAGGCATCGATTGTGATATTAAAAAACCTAGGTTGGAGAATTCGATGCCTGAATCCATAGAATCCAAGTCCTTGGATGCAGAAATGACTACAGGCGGCATGGTCGAGGACGGGGAGAAATTTTTGGAGTCGGATTGTGAAGAAATGGACGTTGAGGAAGATCCAATCGTTGATGTGGTGAAGAAATGTTCGAGGCCGATCTTTTTGAGGAGAGTGCTGAAGGAGGAGCTAGGTTATGATCGTAATGCTCACAAGCTTTTGGTAACTGCCGTTCACGCAGTACTTCTGGAGTCTGGATTTGTGCTGATTGATCCTAATTTAGGTTCTGAGGATAATCCTTTCCGTATGCCGGAAGATTGGCCTTCCCCATCGTTTACGATGTCGCTTTGGTACACCCTACCTAAACTTTTGGCCAAGGAGGACAAGAGTTCTACCATGACTGAAGTAGTTTTATTGAAGTTTCAGAGTTTGGGGCACTTTGTTAATGTTTATGGGTCTCTTAACTGCAGTAGAGGATCTAGTGTTTATCGTATATCTTTGGATGAGAGAAAATTTGCACCAAATCTTGATCTGATTTGGGTGGATTCAGTATCCAGCTACATAATGGATGAAAAAGAAGGGGACCCAGATAAACAAGTTTTTGAACTCTGGAAGCTAGTGAAGGATGCTCTTGCATTGCCACTCTTGATTGATCTCTGTGAAAAAACTGGTTTACCAACTCCTGCAAGCTTTATGCTACTCCCAGCTGATCTGAAGATGAAGATCTTAGAGGCTCTTCCTGGTGTTGATATTGCAAGAGTTGAATGTGTGTGTACTGAATTGCTTTACTTGGCCTCCAGCAATGAGCTGTGGAAGATGAAGTTCACTGAAGAGTTTGGTTCCGAGGACAGTGTTTCAGGAAAAAGGCTATGGAAGTCACAATTTGTTGCACGTTACGAAAACGAAAAGTTGAGAAGCAGGAGAACTAACCATGTGAGGGATTTTCTTAGTTTAGGGTGGCCGGTGCGTCGACCCCCTTATCCGTTCCCAGCTCCTCATGTTATTGGGGGAGATTATGATATTGTGCCTAGTATCAGGCTCCCTACACATGGAATTCCTGGACAATCGTTACGGTGGACGCCGAGGCGTCGACAAGTTTTCATTCCACATTACGATTTGATAGGACGATGA 1491 45.0 MKLRLRSVESKETLRIEVPDQSTIEHLKQTLLQALSSSFSADSLHLSLNRKDELQGSSPEDSLHSTGITSGDLVFFTFKPSGFSSRGGTSIQASSQDSSSSRPGKEIQGIDCDIKKPRLENSMPESIESKSLDAEMTTGGMVEDGEKFLESDCEEMDVEEDPIVDVVKKCSRPIFLRRVLKEELGYDRNAHKLLVTAVHAVLLESGFVLIDPNLGSEDNPFRMPEDWPSPSFTMSLWYTLPKLLAKEDKSSTMTEVVLLKFQSLGHFVNVYGSLNCSRGSSVYRISLDERKFAPNLDLIWVDSVSSYIMDEKEGDPDKQVFELWKLVKDALALPLLIDLCEKTGLPTPASFMLLPADLKMKILEALPGVDIARVECVCTELLYLASSNELWKMKFTEEFGSEDSVSGKRLWKSQFVARYENEKLRSRRTNHVRDFLSLGWPVRRPPYPFPAPHVIGGDYDIVPSIRLPTHGIPGQSLRWTPRRRQVFIPHYDLIGR 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1485072 1486562 - CmoCh16G003250.1 Cmo16g00325 399360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00325 496 PANTHER F-BOX PROTEIN SKIP22 1 491 - -
Cmo16g00325 496 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Cmo16g00325 496 Gene3D - 351 425 - -
Cmo16g00325 496 ProSiteProfiles Ubiquitin domain profile. 1 83 IPR000626 GO:0005515
Cmo16g00325 496 SUPERFAMILY F-box domain 345 419 IPR036047 GO:0005515
Cmo16g00325 496 Gene3D - 1 78 - -
Cmo16g00325 496 MobiDBLite consensus disorder prediction 86 115 - -
Cmo16g00325 496 ProSiteProfiles F-box domain profile. 348 394 IPR001810 GO:0005515
Cmo16g00325 496 PANTHER F-BOX PROTEIN SKIP22 1 491 - -
Cmo16g00325 496 Gene3D - 171 350 - -
Cmo16g00325 496 MobiDBLite consensus disorder prediction 86 105 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00325 K10293 FBXO7; F-box protein 7 - csv:101220545 731.865
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00463 Cmo16g00325 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00325 Cmo-Chr16:1485072 Cmo04g00463 Cmo-Chr4:2304252 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g767 Blo02g00918 . . . . . . . . . . . . . . . . . . . . . . . Cla10g00962 Cam10g0985 Cec10g1016 . Clacu10g1007 Cmu10g1790 Cre10g1163 . . Cone3ag1045 Cone10ag1061 . . . . . . . . . . . . Sed07g1148 Cmo04g00463 Cmo16g00325 . . . . Cpe14g00254 . Bhi11g01103 Tan01g0606 Cmetu07g0362 . . Mch10g0409 . . . . . . . . Lsi03g01007 . . Cme07g02210
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009275 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00325 Cmo_Chr16 FPKM 6.664596 8.573349 6.744496 6.860734 15.759847 18.3297 16.41283 3.918272 4.232787 4.593353