Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00332 ATGGGTGCTCCGAAGCAGAAATGGACTAACGAAGAAGAAGCAGCCCTGAAGGCTGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGAACGATACTTAAGGATCCTGAATTCAGCAGTGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGGAATATGAGCGTGATGGCTAATGGTTGGGGATCCCGAGAGAAGGCCAGGTTGGCTCTTAAGAGATTACATGCTCCTAAAAAAGATGGGAACATTTTGGCTCGAAGTGTTGCTGTCCAAAGTGAAGACGAATTGCCAGAAGCTAAATCTGTTTCTCTTTCCTCGGATATCAAGCTGATAGCTGGTCCAAAGCGATCTAATGTAAGAAAAGAAGAAGAGGAGGAAGAAGAAGAAGATGATGATGAAGAAGAAGAAACGGAAGCAGAAAGAACAGAAAGAGATGCAAGATATGATTGTCATAGGTTAGACAATCTCATAATTGAGGCAATTACTACCTTGAGGGAACCTGGTGGCTCTAATAAGACAAAGATTACCTCATATATAGAGGATCAATACTGGGCACCACCAGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCTTAACAGCTAGTGGTAAACTGGTCAAGGTTAAACGAAAATATAGGCTTCCTCCAGTGATGCCTTCGTCAGAGAGAAGGAGCTCTATGTTATTCTTGGACGACCATCAAAGAGCTTCTTTAAGAACTGACAAGGACGAAATGTGTATTCTTGCTAAAGCTCAAATCGATCTTGAATTGGCCAAGATGAGAACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCATGCAGTTGCAGAAGCAGAAGCAGCTATAGCAGAAGCTGAAGAGGCAGCAAGGGAAGCGGAGGCGGCTGAGGCTGATGCAGAAGCAGCACAATCATTTGCTGAAGCCGCAATGAAGACACTGAAAGGAAGAAATCTTCCAAAGATGGCTTCTTATCCCTAA 990 43.94 MGAPKQKWTNEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPKKDGNILARSVAVQSEDELPEAKSVSLSSDIKLIAGPKRSNVRKEEEEEEEEDDDEEEETEAERTERDARYDCHRLDNLIIEAITTLREPGGSNKTKITSYIEDQYWAPPDFKRLLSSKLKFLTASGKLVKVKRKYRLPPVMPSSERRSSMLFLDDHQRASLRTDKDEMCILAKAQIDLELAKMRTMTSQEAAAAAAHAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMASYP 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1518183 1524610 + CmoCh16G003320.1 Cmo16g00332 399367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00332 329 SMART h15plus2 148 214 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo16g00332 329 Gene3D - 2 59 - -
Cmo16g00332 329 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Cmo16g00332 329 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cmo16g00332 329 SMART sant 4 59 IPR001005 -
Cmo16g00332 329 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 151 219 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo16g00332 329 MobiDBLite consensus disorder prediction 117 147 - -
Cmo16g00332 329 Coils Coil 118 147 - -
Cmo16g00332 329 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Cmo16g00332 329 SUPERFAMILY Winged helix DNA-binding domain 151 226 IPR036390 -
Cmo16g00332 329 PANTHER SINGLE MYB HISTONE 4 1 325 IPR044597 GO:0003691
Cmo16g00332 329 Pfam linker histone H1 and H5 family 156 212 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo16g00332 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Cmo16g00332 329 Gene3D - 151 227 IPR036388 -
Cmo16g00332 329 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 325 - -
Cmo16g00332 329 Coils Coil 272 309 - -
Cmo16g00332 329 MobiDBLite consensus disorder prediction 125 141 - -
Cmo16g00332 329 CDD SANT_TRF 6 56 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00473 Cmo16g00332 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00058 Cmo-Chr1:205931 Cmo16g00332 Cmo-Chr16:1518183 1.19E-35 dispersed
Cmo14g01287 Cmo-Chr14:10777356 Cmo16g00332 Cmo-Chr16:1518183 1.01E-32 dispersed
Cmo16g00332 Cmo-Chr16:1518183 Cmo20g00334 Cmo-Chr20:1634524 4.24E-06 dispersed
Cmo19g00062 Cmo-Chr19:357406 Cmo16g00332 Cmo-Chr16:1518183 6.27E-10 dispersed
Cmo16g00332 Cmo-Chr16:1518183 Cmo03g00951 Cmo-Chr3:7151498 2.57E-75 wgd
Cmo16g00332 Cmo-Chr16:1518183 Cmo04g00473 Cmo-Chr4:2362687 1.44E-151 wgd
Cmo16g00332 Cmo-Chr16:1518183 Cmo07g00654 Cmo-Chr7:2944985 7.99E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11260 PF00538 Linker_histone 1.60E-08 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00332 K09422 - csv:101218411 454.136