Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00335 ATGTCAATCACAGCCTTCAAACTCCCGCCATCAATGGAGCTCACAGTCCCAATTCCCCGAATCCCCCAAAATTTCTTCCCAATTCACAGAGCCCTAACTAAATTCCACGTCAATTCCTCATCCTCATCCAAAAGCCCTAATTTCCAATTACCGCTTCCATCAAAATCGCCCAAGCCACCGAAAACCCTAATCGCTCCAAGAGGCGAAGAATTTCCGACGATGGCGGAGATCGTGGCGGCCGGCGAGGCCCAGAATATAAGCCTCCGGCTGCAAACGTTGGGGCCGTTTTTCCGAATAACGGCGAAAAGTTTGGAATCGCAGCGAGAGATTGGGAAGGCCGAGGGATTGATAAGAGTGTGGTTGCGAGGGAGGATTCTTCACCTGGATTCAATTCGATTGAAGCGAGAGAGCTTGGGAATGGAGAAATCGATCTTTGGACTCGGATTGTTCATCGGCGCTGTTGCGATTCGGTATGGGTATGACTGTGGGTGCAAGACGGCGGAGTTATTGGCCATCAATGACTCCGATCTTTACCATTCTAAGCTCGTTAGATTCTACACAAGGATCGGGTTCAAGAGTGTGTATGAAGTGAGTGGTTCGAAGATAGGAGACATTGGGGACATGTTGGTGTGGGGAGGGGTTGGGACTAGAATGGATGCTCCCATTGAAGCCCTTCTACTTAAATGGTGTTCACGAGAACAAAACGGCGCGAAGCAAATGTCGCGTCGTGAAATTCGGGAATCCGATTCCAATCGTCATCGTTCCAGATTCGATGGAGAACCCAGTCCCAAGAGGTCAAGGAGGGACAGGAAAACATTAGAGGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGATCGGGATCAGAAACATGGGCTTCAACATGAGGGGCAAGATATGATACCCCATGAGTGTTCATCACCACTTGATTCTAAGCCAGAATATGGGGTTAGCAAAGGAGCAAACAGGAACAGTGATAGGAGGGATAGAGGGACAAAACATTCAGTGAATCCCACTGAAGTACCACGATCAAGATCTTATTTACAGCATGTCAAACGTGGTAATGACGGGCAAGTTGGTCGAAGCTTTGGTCGGAGTGCAACTAGGGAGCGTGGTTGGTGGAAGGACTCAAGGGAGAAGGAGAAGGATAACGATAGGGCATCTGGGAAGGCAACAGCTTATAATTCACAGCAAAGAGATGAGATGCCACAAGCCGTGAGAGACGATAGCCACCGTGATGAGTCCTCGAAACAGGAGGTTGATGCACCCACATCTGCTTGGAAAAAGGCCTGCATTTAG 1311 48.44 MSITAFKLPPSMELTVPIPRIPQNFFPIHRALTKFHVNSSSSSKSPNFQLPLPSKSPKPPKTLIAPRGEEFPTMAEIVAAGEAQNISLRLQTLGPFFRITAKSLESQREIGKAEGLIRVWLRGRILHLDSIRLKRESLGMEKSIFGLGLFIGAVAIRYGYDCGCKTAELLAINDSDLYHSKLVRFYTRIGFKSVYEVSGSKIGDIGDMLVWGGVGTRMDAPIEALLLKWCSREQNGAKQMSRREIRESDSNRHRSRFDGEPSPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSPLDSKPEYGVSKGANRNSDRRDRGTKHSVNPTEVPRSRSYLQHVKRGNDGQVGRSFGRSATRERGWWKDSREKEKDNDRASGKATAYNSQQRDEMPQAVRDDSHRDESSKQEVDAPTSAWKKACI 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1551786 1556776 + CmoCh16G003350.1 Cmo16g00335 399370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00335 436 MobiDBLite consensus disorder prediction 40 61 - -
Cmo16g00335 436 PANTHER OS10G0351100-LIKE PROTEIN 61 232 - -
Cmo16g00335 436 MobiDBLite consensus disorder prediction 325 340 - -
Cmo16g00335 436 MobiDBLite consensus disorder prediction 406 423 - -
Cmo16g00335 436 MobiDBLite consensus disorder prediction 238 302 - -
Cmo16g00335 436 MobiDBLite consensus disorder prediction 238 436 - -
Cmo16g00335 436 MobiDBLite consensus disorder prediction 372 392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00335 - - - cmax:111482888 431.409
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00481 Cmo16g00335 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00335 Cmo-Chr16:1551786 Cmo04g00481 Cmo-Chr4:2393791 2.35E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g705 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00981 Cam10g1002 Cec10g1032 Cco10g0995 Clacu10g1023 Cmu10g1806 Cre10g1180 Cone12ag1044 Cone8ag1077 . . . . . . . . . . . . . . Sed13g0434 Cmo04g00481 Cmo16g00335 . . . . . Cpe01g00402 Bhi11g01133 Tan01g0628 Cmetu07g0733 . Hepe07g0411 Mch10g0425 . . . . . . . . Lsi03g01018 . . Cme07g02191
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008447 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00335 Cmo_Chr16 FPKM 2.477447 2.500126 9.403893 9.265902 8.770782 10.330338 10.56126 11.457956 9.38482 9.654136