Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo16g00342 | ATGGAACCTATAGGACCCATTTCAGAAAGGGAATGGATATCTCTCAGTGGAGCTTACACAGCTGAGGAGTCTGATTTCATGGCTAATTTGCTCAACAACTATTGTCTTCCAAACGAGCTCAATCCCGGTTCGAGCTCGGCCGTCCCGTCTGCTTCTTTGGCCATGGCACCCATGGATGAACCTTCTTACTATAGTAATCATTATTACACCTTGAATGAGAATGATTCTCACCCTCCTTGGTTGCCTAATAATGGTGCCTCTTTGTCCTTGGATTTCTCGATGGAGGATGTTCGGAATGGCGATCGATTGGACGATAGCGGTTCGAGTCGAAAAACAAGGCAATGCAGGCTGCAACAATTCCCTGCTGGAAGCTCACAGCCGGAAAAGAGAGCTGAGATCACGGTGGAAGAAGCTACGAAGGACGATAAAGTTGCATCGACACCAGTTGACACCAACTCGAGGAAGCGGTCCCCGAGTTCGTATAATGTCGAAAAGACGAAGACGAGTACGAGGAACACGAGGGCACGGAAGAGCTCGAAGATTGCTTCGGGTAGCTGCAATGAAGAGGAGGATCACATTGTTAGTCCAAATGGGCTGTGCACAAGCAGCTTCAGCTCAGAAGATGACTGTAATGGTGGGATCACTTCCAGCTCAACCCTGAGCTCAAGTGGAAAGCCAAGAGCCAGTAGAGGCTCAGCCACAGACCCTCAAAGCCTCTATGCAAGGGTTGATATCAGTACAATGCTTGAAGAAGCAGTTGAGTATGTGAAGTTCTTGCAGCTTCAAATCAAGCTGTTGAGCTCTGATGATCTATGGATGTATGCACCAATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGCTCATGAAACAAGACAATGCATCACAATAG | 897 | 47.27 | MEPIGPISEREWISLSGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSASLAMAPMDEPSYYSNHYYTLNENDSHPPWLPNNGASLSLDFSMEDVRNGDRLDDSGSSRKTRQCRLQQFPAGSSQPEKRAEITVEEATKDDKVASTPVDTNSRKRSPSSYNVEKTKTSTRNTRARKSSKIASGSCNEEEDHIVSPNGLCTSSFSSEDDCNGGITSSSTLSSSGKPRASRGSATDPQSLYARVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ | 298 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 1580268 | 1581725 | - | CmoCh16G003420.1 | Cmo16g00342 | 399377 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo16g00342 | 298 | PANTHER | TRANSCRIPTION FACTOR BHLH84-LIKE | 242 | 295 | - | - | |
| Cmo16g00342 | 298 | MobiDBLite | consensus disorder prediction | 119 | 192 | - | - | |
| Cmo16g00342 | 298 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 242 | 295 | - | - | |
| Cmo16g00342 | 298 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 5 | 242 | - | - | |
| Cmo16g00342 | 298 | PANTHER | TRANSCRIPTION FACTOR BHLH84-LIKE | 5 | 242 | - | - | |
| Cmo16g00342 | 298 | MobiDBLite | consensus disorder prediction | 130 | 149 | - | - | |
| Cmo16g00342 | 298 | MobiDBLite | consensus disorder prediction | 211 | 235 | - | - | |
| Cmo16g00342 | 298 | MobiDBLite | consensus disorder prediction | 150 | 168 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo11g01419 | Cmo16g00342 | CCT | |
| Cmo11g01419 | Cmo16g00342 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo16g00342 | Cmo-Chr16:1580268 | Cmo11g00470 | Cmo-Chr11:2301693 | 1.60E-08 | dispersed | |
| Cmo11g01419 | Cmo-Chr11:9982115 | Cmo16g00342 | Cmo-Chr16:1580268 | 6.67E-37 | wgd | |
| Cmo16g00342 | Cmo-Chr16:1580268 | Cmo04g00483 | Cmo-Chr4:2409281 | 8.27E-95 | wgd | |
| Cmo16g00342 | Cmo-Chr16:1580268 | Cmo09g00277 | Cmo-Chr9:1225906 | 1.89E-14 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo16g00342 | - | - | cpep:111810674 | 548.895 |