Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00343 ATGACAGCCATCCCTCCTCCTCCTCCTGCTGGTCGGGAGCTTTCAAATCCTCCGTCTGACGGCATTTCCAATCTCCGGTTCTCCAACCACAGTGACCACCTACTTGTTTCCTCTTGGGACAAGACTGTGCGCTTGTACGACGCCAGCGCCAACGTGCTCCGCGGTGAGTTCGTACACGGTGGTCCTGTGCTCGACTGTTGTTTCCACGACGATTCTTCGGGATTCAGTGCGAGTGTTGACAACACTGTCAGGAGGCTTGTTTTCAATCATAATAAGGAGGATATATTAGGGAAGCATGATGCACCTGTGCGGTGCGTTGAGTACTCTTACGCGGCAGGGCAATTAATTACTGGCAGTTGGGATAAAACACTGAAGTGTTGGGATCCCAGAGGTGCAAGTGGTCAGGAACATACGCTGGTTGGAACATATCCTCAGCCTGAGCGTGTTTATTCACTCTCTCTTGTGGGGAACCGTTTAGTTGTCGCAACTGCTGGAAGGCATGTTAATGTCTATGACTTGAGAAATATGTCTCAACCCGAGCAAAGAAGAGAATCTTCATTGAAATATCAGACTCGATGTGTGCGGTGTTATCCAAATGGAACAGGTTATGCTCTTAGTTCTGTTGAAGGACGAGTAGCTATGGAATTTTTTGATCCCTCAGAGGCTAGTCAAGCCAAAAAGTACGCATTCAAATGTCACAGAAAATCAGAGGCTGGAAGAGACATAGTCTATCCGGTCAATGCCATTGCATTCCATCCTATCTATGGTACTTTTGCAACTGGAGGTTGTGATGGGTACGTGAATGTTTGGGATGGGAACAACAAGAAGAGACTATATCAGTATTCAAAATACCCAACAAGTATTGCAGCTCTGTCATTTAGTAGAGATGGACGCCTATTAGCTGTAGCATCAAGTTACACATTTGAAGAGGGAGATAAGCCCCACGAGCCAGATGCCATATATGTCCGCAGTGTAAATGAAATAGAAGTTAAGCCAAAGCCTAAAGTATACCCCAATCCTCCAACATGA 1029 46.36 MTAIPPPPPAGRELSNPPSDGISNLRFSNHSDHLLVSSWDKTVRLYDASANVLRGEFVHGGPVLDCCFHDDSSGFSASVDNTVRRLVFNHNKEDILGKHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQEHTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDPSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIYVRSVNEIEVKPKPKVYPNPPT 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1585931 1591137 + CmoCh16G003430.1 Cmo16g00343 399378

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00343 342 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 96 128 - -
Cmo16g00343 342 ProSiteProfiles Trp-Asp (WD) repeats profile. 96 128 IPR001680 GO:0005515
Cmo16g00343 342 PANTHER MRNA EXPORT FACTOR AND BUB3 8 337 - -
Cmo16g00343 342 Gene3D - 8 336 IPR015943 GO:0005515
Cmo16g00343 342 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Cmo16g00343 342 PRINTS G protein beta WD-40 repeat signature 115 129 IPR020472 -
Cmo16g00343 342 PRINTS G protein beta WD-40 repeat signature 258 272 IPR020472 -
Cmo16g00343 342 ProSiteProfiles Trp-Asp (WD) repeats profile. 246 280 IPR001680 GO:0005515
Cmo16g00343 342 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.2 8 337 - -
Cmo16g00343 342 Pfam WD domain, G-beta repeat 230 271 IPR001680 GO:0005515
Cmo16g00343 342 Pfam WD domain, G-beta repeat 96 128 IPR001680 GO:0005515
Cmo16g00343 342 Pfam WD domain, G-beta repeat 20 47 IPR001680 GO:0005515
Cmo16g00343 342 SMART WD40_4 89 128 IPR001680 GO:0005515
Cmo16g00343 342 SMART WD40_4 223 271 IPR001680 GO:0005515
Cmo16g00343 342 SMART WD40_4 136 172 IPR001680 GO:0005515
Cmo16g00343 342 SMART WD40_4 50 87 IPR001680 GO:0005515
Cmo16g00343 342 SMART WD40_4 7 47 IPR001680 GO:0005515
Cmo16g00343 342 SUPERFAMILY WD40 repeat-like 17 305 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00343 K02180 BUB3; cell cycle arrest protein BUB3 - csv:101212434 669.848
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00484 Cmo16g00343 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00674 Cmo-Chr12:4513817 Cmo16g00343 Cmo-Chr16:1585931 7.10E-66 dispersed
Cmo16g00343 Cmo-Chr16:1585931 Cmo03g00972 Cmo-Chr3:7320619 3.72E-06 dispersed
Cmo14g01416 Cmo-Chr14:11561697 Cmo16g00343 Cmo-Chr16:1585931 3.28E-64 transposed
Cmo16g00343 Cmo-Chr16:1585931 Cmo04g00484 Cmo-Chr4:2416430 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g696 Blo02g00931 . . Bda08g00679 . . Bma05g00651 . . . . . . . . . . . . . . . . . Cla10g00999 . . Cco10g1017 . . . Cone12ag1050 Cone8ag1082 . . . . . . . . . . . Bpe05g00473 . . Sed11g0819 Cmo04g00484 Cmo16g00343 . . . . Cpe14g00270 Cpe01g00405 Bhi11g01139 Tan01g0641 Cmetu09g1555 . Hepe07g0419 Mch10g0449 . . . . . . . . Lsi03g01027 . . Cme07g02177
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009995 1 1 1 2 1 0 2 1 0 1 1 0 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00343 Cmo_Chr16 FPKM 1.76087 1.517407 3.817469 1.820078 0.129977 0.327903 0.56025 20.25038 22.141441 16.523176