Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00344 ATGAAGTTCATGAAACTTGGATCAAAACCTGATTCGTTTCAGACTGATGGGAACAATGTTAGGTATGTTGTAAGTGAATTAGCTACAGATATCACTGTTATCGTTGGGGATGTCAAGTTTTACCTCCACAAGTTTCCCCTTCTGTCAAAGAGTGCTCACTTACAGAAGCTGGTCACAGCGGGCGCTGGGGAGCCGAACGATGAAGTATATATTCCCGAGATCCCGGGCGGTTCTGCAGCATTTGAGATATGTGCCAAATTTTGTTACGGCATGACTGTTACTCTTAATGCCTATAACGTAGTTGCAGCTCGTTGTGCTGCCGAATACCTCGGAATGCACGAGACAATCGAAAAGGGAAACCTCGCCTACAAAATCGACATTTTCCTTAGTTCGAGCATCTTTCGTAGCTGGAAGGATTCAATCATTGTTCTTCAGACAACAAAGGCATTGATGCCATTATCTGAGGAACTGAAGTTAGTAAGCAATTGCTTAGAATCTATTGCAGTGAAGGCCTCCGCTGATGTTTCTAATGTTGACTGGTCTTATACATACAACCGAAACAAACTACTCGACGAAAACGATAACAATCCCAACTGGAATGGCGTGAGAAATCGTAGCGTGCCGAAGGATTGGTGGGTCGAGGATCTTTGTGAGCTAGAAATCGATGTATATAAGCGTGTCATAGCGAGTATCAAAAGTAAAGGAATCGTCCTTAATGATGTGATTGGAGAAGCCTTGAAAGCTTACGCGTACCGATACCTTCCCGGGTTTACCAAAAGCGTGCTTCGATGTGGGGATCTGCTGAAGTATCAATCAGCAGTGGCAACAATTGTGTGGCTGTTACCTTCTGAGAAAGGCAGTGTCTCGAGTAGCTTCTTGTCGAAATTGCTGAAGGCTTCCATTTTCTTAGCTTCTGGAGACGAGACCAAAGACGAGCTCGTTCGACTAATGGGACAGCAGCTAGAAGAGGCTACAGTGAGTGATCTTCTGCTACGAGCACCGGAAGGTGAAGCTACGACTTATGATGTCGATGCTGTGCAGAAAATGGTGGAGATATTTCTTTTGCAAGATCATAATACCGAGATTGAGTCGCTTGAAGAGGGAAATGAGCTCGAGGAGCCAAGAGGGGCACGGATTTTATCAGATGCTACTAAGTTGATGGTGGCGAAATTGATTGATGGTTACCTCGCTGAAATCGCGAAGGATCGTAACTTACCATCAGTAAAGTTCATTGATCTTGCAGAAATGGTATCTGGCATCGCTCGACCTTCGCACGATGGGCTCTATCGAGCTATAGACATGTATCTAAAGGAACATCCAGGGATCAGCAAGAGTGACAAGAAGAGAATCTGCAAACTGATAGACTGCAAGAAGCTATCTGCTGATGCCTGCATTCATGCAGTACAAAACGAACGGCTCCCTCTACGTATGGTTGTGCAGGTATTATTTTTCGAGCAAGTCAGGGCGTCGGCGTCATCAGGCAGCAGCACTCCCGACCTACCTAAAGGGATCAAGGATCTAACGAGCGGGTCACACGGCAGCTCAAGATCCGCCACGACGAACCCTGAGGAAGACTGGGATGCAGTAGCCATGGCTGAGGAGCTGAAGGCCCTCAAAGGGGAGCTGGCTTCCTTAAGGGTTGCTAATGGTAGAGGAGGTAGTGAGAGGAATGGAGTTGGTAAAAATGGTATTGACAAAGCAGCTCTGAGTAAGATGAAAGGCATGCTGAAGTCAAAGAAGCTTTTCACTAAGCTATGGTCAAGTAAAGGAGGAGGGTATGGTGAAAACAGCAGCTCGGATTCGTCGGAGAGCCTCGGGTCTGCTAATCAGGAGGAAGCGAAGTCAACGCCTTCGAGGAACCGAAGCGTTAAATTTAGTCCAGAACCAAGTGTCAAAATCGTCGTCTAA 1908 46.38 MKFMKLGSKPDSFQTDGNNVRYVVSELATDITVIVGDVKFYLHKFPLLSKSAHLQKLVTAGAGEPNDEVYIPEIPGGSAAFEICAKFCYGMTVTLNAYNVVAARCAAEYLGMHETIEKGNLAYKIDIFLSSSIFRSWKDSIIVLQTTKALMPLSEELKLVSNCLESIAVKASADVSNVDWSYTYNRNKLLDENDNNPNWNGVRNRSVPKDWWVEDLCELEIDVYKRVIASIKSKGIVLNDVIGEALKAYAYRYLPGFTKSVLRCGDLLKYQSAVATIVWLLPSEKGSVSSSFLSKLLKASIFLASGDETKDELVRLMGQQLEEATVSDLLLRAPEGEATTYDVDAVQKMVEIFLLQDHNTEIESLEEGNELEEPRGARILSDATKLMVAKLIDGYLAEIAKDRNLPSVKFIDLAEMVSGIARPSHDGLYRAIDMYLKEHPGISKSDKKRICKLIDCKKLSADACIHAVQNERLPLRMVVQVLFFEQVRASASSGSSTPDLPKGIKDLTSGSHGSSRSATTNPEEDWDAVAMAEELKALKGELASLRVANGRGGSERNGVGKNGIDKAALSKMKGMLKSKKLFTKLWSSKGGGYGENSSSDSSESLGSANQEEAKSTPSRNRSVKFSPEPSVKIVV 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1594661 1600003 + CmoCh16G003440.1 Cmo16g00344 399379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00344 635 Pfam NPH3 family 210 464 IPR027356 -
Cmo16g00344 635 ProSiteProfiles NPH3 domain profile. 210 488 IPR027356 -
Cmo16g00344 635 Coils Coil 528 548 - -
Cmo16g00344 635 MobiDBLite consensus disorder prediction 590 625 - -
Cmo16g00344 635 Pfam BTB/POZ domain 28 117 IPR000210 GO:0005515
Cmo16g00344 635 Gene3D Potassium Channel Kv1.1; Chain A 7 120 IPR011333 -
Cmo16g00344 635 MobiDBLite consensus disorder prediction 589 635 - -
Cmo16g00344 635 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY2 1 623 IPR029960 GO:0009958
Cmo16g00344 635 SUPERFAMILY POZ domain 21 117 IPR011333 -
Cmo16g00344 635 PANTHER OS12G0117600 PROTEIN 1 623 IPR043454 -
Cmo16g00344 635 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Cmo16g00344 635 MobiDBLite consensus disorder prediction 508 522 - -
Cmo16g00344 635 MobiDBLite consensus disorder prediction 491 524 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00344 - - - csv:101210637 1078.93
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00485 Cmo16g00344 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01863 Cmo-Chr4:9345779 Cmo16g00344 Cmo-Chr16:1594661 2.51E-154 dispersed
Cmo05g00352 Cmo-Chr5:1580819 Cmo16g00344 Cmo-Chr16:1594661 0 dispersed
Cmo12g00318 Cmo-Chr12:1977422 Cmo16g00344 Cmo-Chr16:1594661 0 dispersed
Cmo16g00344 Cmo-Chr16:1594661 Cmo18g00768 Cmo-Chr18:9268064 2.55E-145 dispersed
Cmo16g00344 Cmo-Chr16:1594661 Cmo03g00957 Cmo-Chr3:7196357 0 wgd
Cmo16g00344 Cmo-Chr16:1594661 Cmo04g00485 Cmo-Chr4:2426182 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g693 Blo02g00933 Blo03g00074 Bda06g01203 Bda08g00675 Bpe07g00274 . . Bma12g00281 . . . . . . . . . . . . . . . . Cla10g01000 Cam10g1022 Cec10g1053 Cco10g1018 Clacu10g1040 Cmu10g1824 Cre10g1197 . . Cone3ag1025 Cone10ag1040 . . . . . . . . . Bpe05g00475 . . . Cmo04g00485 Cmo16g00344 . . . . Cpe14g00271 Cpe01g00406 Bhi11g01141 . . . . Mch10g0450 . . . . . . . . Lsi03g01029 . . Cme07g02176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001152 3 7 3 2 3 2 2 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 8 2 2 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00344 Cmo_Chr16 FPKM 6.126741 5.283661 5.953074 4.82486 6.420284 7.066306 9.802867 5.719781 6.147399 7.809306