Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00352 ATGGCTGTCGATTCTTCTCTCTCTTCACCTCTCGGCCCTCCCGCCTGCGAAAAGGACGCCAAGGCTCTTCAATTCATCGAGCAAATGACTCGCAACGCCGACGCTGTCCAGCAGACAGTCCTCGCCGAAATCTTGACCAGAAACGCTGCCACCGAGTACCTCCGCCGTTACTCCCTCGACGGCGCCACCGATCCCCACACCTTCAAAGAAAAACTCCCGGTCATCACCTACGAGGATCTCGAGCCAGACATCCAACGGATTGCCAATGGAGATCGCTCTCCTATCCTCTCCTCCCATCCAATCTCCGAGTTCCTCACCAGTTCTGGTACTTCTGCCGGTGAGAGGAAGCTTATGCCGACGATTAAGGAGGAGCTGGATCGTCGTCAACTTCTGTACAGTCTACTCATGCCAGTTATGAACCTCTATGTGCCTGGGCTGGATAAAGGCAAGGGGCTTTACTTCTTGTTTGTGAAATCGGAGACGAGGACTCCGGGTGGGCTCTTGGCCCGACCTGTTTTGACCAGTTACTACAAGAGCGACCACTTCAAGACCCGACCCTACGACCCGTTTGTTGTCTACACGAGCCCTAACGAGGCCATCCTCTGCCCCGATTCCTTCCAGAGCATGTACACGCAGATGCTCTGCGGTCTTCTTCAACGCCATCAAGTCCTCCGCCTCGGCGCCGTCTTCGCCTCCGGCCTTCTCCGAGCCATTCGATTCCTTCAATTGAACTGGCAGGACCTTGCTAACGATATCCGGAACGGAACGTTGAATTCGAAAATCACCGATCCGTCGTTGAGAGATTGCATTGAGAAGATCCTTAAGCCGGACGCGGAATTGGCGGATTTCGTTTCGGATGAATGTTCGAAGGAGGATTGGGAGGGAATCGTGACGAGGATTTGGCCGAAGACGAAATACCTCGACGTGATCGTCACTGGAGCGATGGCGCAGTACATTCCAACGCTTGATTACTACAGCGGCGGATTGCCTCTGGCTTGCACGATGTACGCATCTTCCGAATGTTATTTCGGACTGAATCTGAACCCTATGTGCAAGCCATCGGAGGTTTCCTACACTATAATGCCAAACATGGCGTACTTCGAGTTTCTCCCTCACGAGCCAAACACCGAAAGCGATTCGCCGCCGAAACTCGTCGACCTGGTAGACGTGGAGGTCGGAAAAGAATACGAACTAGTAATCACAACATACGCCGGACTTTACCGGTACCGAGTAGGCGACATACTCCGAGTTACCGGATTCCACAACGCAGCGCCGCAGTTCCACTTCGTGAGGAGGAAGAACGTGGTCCTGAGCATCGACTCAGACAAAACGGACGAAGCGGAGTTGCAGAAGGCAGTGGAGAATGCATCAAAGCTGCTGAAGGAATGGAAGGCGAGCGTGGTTGAGTACACGAGTTACGCAGAGACGAAGACGATTCCAGGGCACTACGTGATATACTGGGAACTGATGGTGAAGGAAGCGGAAGGGAAATGGCCGAGCAAGGAGGTAATGGAGGAGTGCTGCTTGGCAATGGAGGAATCACTGAACTCGGTGTACCGACAAGGGCGAGTTGCAGACCATTCGATCGGAGCTTTAGAAATCAGAGTGGTGAAGAACGGAACATTCGAAGAACTGATGGATTACGCAATTTCCAGAGGAGCCTCTATCAACCAGTATAAGGTGCCGAGGTGTGTGAACTTTACTCCCATTATGGAACTTCTCGATTCTAGAGTAGTGTCCGCACACTTCAGCCCTGCCCTGCCACGTTGGACTCCAGCTAGGACACGCTAA 1791 53.04 MAVDSSLSSPLGPPACEKDAKALQFIEQMTRNADAVQQTVLAEILTRNAATEYLRRYSLDGATDPHTFKEKLPVITYEDLEPDIQRIANGDRSPILSSHPISEFLTSSGTSAGERKLMPTIKEELDRRQLLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSDHFKTRPYDPFVVYTSPNEAILCPDSFQSMYTQMLCGLLQRHQVLRLGAVFASGLLRAIRFLQLNWQDLANDIRNGTLNSKITDPSLRDCIEKILKPDAELADFVSDECSKEDWEGIVTRIWPKTKYLDVIVTGAMAQYIPTLDYYSGGLPLACTMYASSECYFGLNLNPMCKPSEVSYTIMPNMAYFEFLPHEPNTESDSPPKLVDLVDVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNAAPQFHFVRRKNVVLSIDSDKTDEAELQKAVENASKLLKEWKASVVEYTSYAETKTIPGHYVIYWELMVKEAEGKWPSKEVMEECCLAMEESLNSVYRQGRVADHSIGALEIRVVKNGTFEELMDYAISRGASINQYKVPRCVNFTPIMELLDSRVVSAHFSPALPRWTPARTR 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1630666 1632704 - CmoCh16G003520.1 Cmo16g00352 399387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00352 596 Coils Coil 446 466 - -
Cmo16g00352 596 Pfam GH3 auxin-responsive promoter 26 567 IPR004993 -
Cmo16g00352 596 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.2-RELATED 5 594 - -
Cmo16g00352 596 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 5 594 IPR004993 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00352 K14487 GH3; auxin responsive GH3 gene family - csv:101203475 1105.12
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00495 Cmo16g00352 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00352 Cmo-Chr16:1630666 Cmo16g00925 Cmo-Chr16:5716355 0 dispersed
Cmo20g00601 Cmo-Chr20:2953380 Cmo16g00352 Cmo-Chr16:1630666 0 dispersed
Cmo01g00333 Cmo-Chr1:1586280 Cmo16g00352 Cmo-Chr16:1630666 0 transposed
Cmo14g01426 Cmo-Chr14:11627161 Cmo16g00352 Cmo-Chr16:1630666 0 transposed
Cmo16g00352 Cmo-Chr16:1630666 Cmo03g00971 Cmo-Chr3:7300781 0 wgd
Cmo16g00352 Cmo-Chr16:1630666 Cmo04g00495 Cmo-Chr4:2470212 0 wgd
Cmo16g00352 Cmo-Chr16:1630666 Cmo07g00687 Cmo-Chr7:3092278 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g658 Blo02g00943 Blo03g00084 Bda06g01215 Bda08g00668 Bpe07g00263 . Bma05g00671 Bma12g00268 . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1010 Cone10ag1027 . . . . . . . . . Bpe05g00487 . . . Cmo04g00495 Cmo16g00352 . . . . Cpe14g00277 Cpe01g00415 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000806 5 3 4 3 3 3 4 3 4 3 3 3 5 3 3 4 3 4 2 3 3 2 2 3 3 3 2 2 2 2 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00352 Cmo_Chr16 FPKM 17.064699 18.498753 17.412424 15.258854 19.433559 27.999441 17.963278 24.441788 23.109476 21.189764