Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00355 ATGGAAGAAAGAGATGAATATACAGAATCGAGAAGTAATAATAATGCTGAAGCCGTACAAGAAGCCAAGATCAGTGTTGAAGCTGAAATGCGAACTTGTCTTTCAAATGAGCAAAAGCATTCAGTTCCTGATTATCATGAATTGGAAGCAACTCCAGGATATTCCAACAAAACTGGCGGTTCAGATGAAGAAAAGCCAGAGGTCCAGCAGAATATGGAGGAAGAGAATAGGGAACTTGGTTCAGGAGATGTGCTTATTGAATTATCAGAAAAACACAATCAGACTTTCTCTAACCTTGCTGATAATGATCAAGTTGAAGCTGGTAATTTATTATGCTGTGATAAAGATACCGAAAATTTGATAGTACCTATTGAAGTTGAGACAACGACTCTTCTTGTTGACTGCTCTGAACTTCCACCTGAAGTTGTCAACAAAAACTATATTGAACAGATGAACCCTCCTAATGAAAAATTAACCCAAAATACTCCTTTCCAAAATTTAGAAACAGTCCCCAGTAATTCAGAACAATCGGATCACAAGGATAAGAGAATTTTGAAATCAATTAAGATAAATTCTATTTTAAGGTCCCTTGTAAGTAGTGACAGAAATCTGCGTTCAAAGACCCAAGAGAAAGATAAAGATCCTGAACCAAGTAATGACTTAAATAATTTTACTGCTGAAGAGGGAAAAGGGAAGAAGAAGGAGAGAAATATACAAGGAAAGGGAGCAAGAGTCGATGAATTCTCATCAATCAGGAATCATTTGAGATATTTACTGAACCGCATCAAATATGAACAGAACTTGATTGAAGCTTATTCTAGTGAAGGCTGGAAAGGGTTCAGCTCAGATAAATTGAAGCCTGAAAAGGAACTTCAACGGGCATCAAATGAAATAATGCGGCGCAAATTAAAAATAAGAGATGTATTTCAACGTATTGATGCACTTTGTGGCGAAGGAGGCCTTTCTAAATCTTTATTCGATTCTCAAGGACAGATAGACAGTGAAGATATATTCTGTGCAAAATGTGGATCCAAAGAATTGTCCTTTGAGAATGACATCATACTATGTGATGGTATTTGTGATCGTGGGTTCCATCAGTTCTGTTTAGAACCACCTTTGCTAAATACAGACATTCCGCCAGATGATGAAGGATGGCTATGCCCCGGATGTGATTGCAAAGATGACTGCTTGAATCTGCTTAATGAATTTCAAGGATCAAGACTTTCCATCACTGATGGTTGGGAGAAAGTCTATCCCGAGGCCGCAGCATCAGCTGCTGGACGAAATTTTGATCATGCCTCAGGTCTTCCTTCAGATGATTCTGTAGATGATGATGATTATGATCCTGATGTTCCAGATACTATTGTCCAGGACGATGAATCAAGTCCTGAAACATCTGGGTATGCTTCTGCTTCTGAGGAATTAGAGTCTCCACCCAATGTTGACCAGTACTTAGGTCTCCCTTCCGATGATTCGGAGGATGATGACTATGATCCCAGTGCTCCAGAACGTGATGAAGATGTTAGACAGGAAAGTTCAAGTTCTGACTTTACATCTGATTCTGAGGATTTAGCTGCACTTGACAGTAACCCCTCTTCCAAAGCTGATAACCTTGTGTCTCCATCACTGAATAATACTACGTCTATGAAAAACCCTGATGGGCGAAGTTCTGGAGGTGGTCCTAGAAAGAGTGCACTGTATAATGAGCTATCAAGTCTACTAGAGTCCGGTCCTGATAAGGACGGTCCTGAACCTGTTTTGGGAAGAAGACAGGTGGAACGGTTGGATTACAAGAAGCTCCATGATGAGACATATGGGAATGTTCCTACCGACTCAAGCGATGACACGTACGCAAGTGTTTCTATGGATTCAAGTGATGACCAAGGCTGGGATAGTAATACAAGGAAGAGAAGTCCTAAAACCCTGGTTCTTGCTCTGCCAAATTATCGAACTAATGATGATTTGACTAACATAAAAACTAAACACAGTTCTAAGAGGGGTACTCGTCAAAAGGCAGTTGCTGCAAATATGAATAAATCTGTGAGTAAAACTCCTGAAGACACTGGAAAAGCTAGTTCTTCTGTTAGGAGAACCACACCATCATCGTATAGAAGACTCAGTCGACTTGCATTGGAGAGACTTTTAGCATCATTCCAAGAAAACCAGTATCCTGAACGAGCTACAAAGGAGAGTCTGGCACAAGAACTAGGGCTCAGTGTGAAGCAGGTTAGCAAATGGTTTACGAACACACGTTGGAGCACACGCCATCCCTCAAGCGTTGAGGGTAATAAAGCGAAGAGTTCCTCAAGAATGGGCATTCATTCATCTCAGGCAAGTGGAGAGCTGCACCAGCCCGAGCAAGAATTTGGTGCCCAACATCAAGAATTACCAACAGCAGATAGTGTTGTGGCCCCATGTCAGAGTGGGGATACAGGGGATGTCAAATTGGCAACTCAGGAAACTAAAAGATCAGAATTTTCTGCCACAAAATCCAGAAAACGGAAGGGCAGGTCAGATCACGCTGCATCATGTTCAAAGGACAGTAAGGAATCACAAAGGCCTCCTGCCAAGTCACCAAAAGTAAATGAAATCCAAACAGCACATAGCATTAAGACGAGGAGGAGAAATTCCTTATAG 2637 41.11 MEERDEYTESRSNNNAEAVQEAKISVEAEMRTCLSNEQKHSVPDYHELEATPGYSNKTGGSDEEKPEVQQNMEEENRELGSGDVLIELSEKHNQTFSNLADNDQVEAGNLLCCDKDTENLIVPIEVETTTLLVDCSELPPEVVNKNYIEQMNPPNEKLTQNTPFQNLETVPSNSEQSDHKDKRILKSIKINSILRSLVSSDRNLRSKTQEKDKDPEPSNDLNNFTAEEGKGKKKERNIQGKGARVDEFSSIRNHLRYLLNRIKYEQNLIEAYSSEGWKGFSSDKLKPEKELQRASNEIMRRKLKIRDVFQRIDALCGEGGLSKSLFDSQGQIDSEDIFCAKCGSKELSFENDIILCDGICDRGFHQFCLEPPLLNTDIPPDDEGWLCPGCDCKDDCLNLLNEFQGSRLSITDGWEKVYPEAAASAAGRNFDHASGLPSDDSVDDDDYDPDVPDTIVQDDESSPETSGYASASEELESPPNVDQYLGLPSDDSEDDDYDPSAPERDEDVRQESSSSDFTSDSEDLAALDSNPSSKADNLVSPSLNNTTSMKNPDGRSSGGGPRKSALYNELSSLLESGPDKDGPEPVLGRRQVERLDYKKLHDETYGNVPTDSSDDTYASVSMDSSDDQGWDSNTRKRSPKTLVLALPNYRTNDDLTNIKTKHSSKRGTRQKAVAANMNKSVSKTPEDTGKASSSVRRTTPSSYRRLSRLALERLLASFQENQYPERATKESLAQELGLSVKQVSKWFTNTRWSTRHPSSVEGNKAKSSSRMGIHSSQASGELHQPEQEFGAQHQELPTADSVVAPCQSGDTGDVKLATQETKRSEFSATKSRKRKGRSDHAASCSKDSKESQRPPAKSPKVNEIQTAHSIKTRRRNSL 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1640025 1645344 + CmoCh16G003550.1 Cmo16g00355 399390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00355 878 CDD homeodomain 704 758 IPR001356 GO:0003677
Cmo16g00355 878 MobiDBLite consensus disorder prediction 429 639 - -
Cmo16g00355 878 MobiDBLite consensus disorder prediction 440 457 - -
Cmo16g00355 878 MobiDBLite consensus disorder prediction 669 701 - -
Cmo16g00355 878 SMART PHD_3 338 391 IPR001965 -
Cmo16g00355 878 MobiDBLite consensus disorder prediction 458 477 - -
Cmo16g00355 878 ProSiteProfiles Zinc finger PHD-type profile. 336 393 IPR019787 -
Cmo16g00355 878 SUPERFAMILY Homeodomain-like 693 757 IPR009057 -
Cmo16g00355 878 MobiDBLite consensus disorder prediction 1 77 - -
Cmo16g00355 878 MobiDBLite consensus disorder prediction 201 243 - -
Cmo16g00355 878 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 109 822 - -
Cmo16g00355 878 MobiDBLite consensus disorder prediction 514 554 - -
Cmo16g00355 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 391 IPR013083 -
Cmo16g00355 878 MobiDBLite consensus disorder prediction 661 701 - -
Cmo16g00355 878 MobiDBLite consensus disorder prediction 582 605 - -
Cmo16g00355 878 MobiDBLite consensus disorder prediction 753 878 - -
Cmo16g00355 878 SUPERFAMILY FYVE/PHD zinc finger 329 396 IPR011011 -
Cmo16g00355 878 ProSiteProfiles 'Homeobox' domain profile. 697 757 IPR001356 GO:0003677
Cmo16g00355 878 CDD PHD_PRHA_like 338 390 IPR045876 -
Cmo16g00355 878 SMART HOX_1 699 761 IPR001356 GO:0003677
Cmo16g00355 878 MobiDBLite consensus disorder prediction 838 856 - -
Cmo16g00355 878 MobiDBLite consensus disorder prediction 606 628 - -
Cmo16g00355 878 Pfam Homeodomain 704 752 IPR001356 GO:0003677
Cmo16g00355 878 MobiDBLite consensus disorder prediction 204 218 - -
Cmo16g00355 878 MobiDBLite consensus disorder prediction 60 77 - -
Cmo16g00355 878 ProSitePatterns 'Homeobox' domain signature. 732 755 IPR017970 GO:0000981|GO:0006355
Cmo16g00355 878 MobiDBLite consensus disorder prediction 753 783 - -
Cmo16g00355 878 PANTHER HOMEOBOX PROTEIN HAT3.1 109 822 - -
Cmo16g00355 878 Pfam PHD-finger 338 393 IPR019787 -
Cmo16g00355 878 ProSitePatterns Zinc finger PHD-type signature. 339 390 IPR019786 -
Cmo16g00355 878 Gene3D - 693 761 - -
Cmo16g00355 878 MobiDBLite consensus disorder prediction 226 243 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00355 - - - cpep:111809619 1637.85
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00496 Cmo16g00355 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00366 Cmo-Chr11:1806812 Cmo16g00355 Cmo-Chr16:1640025 8.38E-12 dispersed
Cmo16g00355 Cmo-Chr16:1640025 Cmo15g01080 Cmo-Chr15:7154773 3.36E-06 dispersed
Cmo16g00355 Cmo-Chr16:1640025 Cmo04g00496 Cmo-Chr4:2479320 5.67E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g656 Blo02g00944 Blo03g00085 Bda06g01216 Bda08g00666 Bpe07g00262 . Bma05g00672 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1009 Cone10ag1026 . . . . . . . . . Bpe05g00488 . . . Cmo04g00496 Cmo16g00355 . . . . Cpe14g00278 Cpe01g00416 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003741 2 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11261 PF00046 Homeodomain 4.30E-11 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00355 Cmo_Chr16 FPKM 4.359776 5.373483 4.170182 3.858872 3.432668 3.773187 3.62576 5.298524 4.820026 5.473366