Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00362 ATGGCCTTCTCTGAGTTCCGTCCGCTTGATGAGAGCTCCCTGATTGAGTACATTAAGACTGTTCCTTCGCTGTCTGACAAGCTGGGTAATAAGTTCGATGATATTCAGATTAAGGAAATCGGAGATGGGGAATCATGGCCAATGACAAAGGAGCGAGCATATTTTGAGGCAGTGGCATTGAGAAAGCATGGACTTTTGTGCCCAAATCATGTGCCTGATGTTTATCACTTCGATCGTACCATGTCGTTGATTGGCATGCGTTACTTGGAACCTCCTCATATAATCCTGAGGAAAGGTTTGATCGCTGGAATTGAGTATCCATTGCTGGCAGATCACGTAACGGAATACATGGCGAAGACTCTCTTCGGCACGTCGATCCTTTATAATTCTACCACCGTGCACAAAGAATCCGTTGCAGAGTTCTGTGGGAATGTGGAGCTATGCAGGCTCACTGAGCAAGTTGTGTTTTCTGACCCATACAAAGTGTCTGAATACAATCGTTGGACATCACCGTATCTTGATCACGATGCCGAGGCTGTTAGAAACGACAACGATTTGAAGGTCGAGATTGCTGAGTTGAAAGCAAAGTTTATAGAGAGAACCCAGGCGCTTGTTCATGGAGATCTTCACACAGGGTCCATTATGGTTACTCAAGAATCAACACAAGTTATAGATCCAGAGTTCGCATTCTATGGACCAATGGGATTCGATATCGGAGCATTTCTGGGGAACTTAATCTTGGCCTTCTTTTCACAAGATGGACATGCCGTGGAAGGCAACGATCGAAATGCATACAAGGAGTGGATTCTGAGGACGATCGAAGAGACATGGAATCTGTTTCGTAAGAAGTTCGTGGGACTATGGGAGCTGCACAAGGATGGTCCTGGGGAGGCTTATCTCCCTGCCATTTACGACAACCCCGAGCTCCAGCAGCTGGTTCAGAACAAATATTTAACCGACTTGTTCCACGACAGCCTTGGTTTCGGAGCAGCTAAAATGATCAGGAGAATAGTGGGAGTGGCTCATGTGGAAGACTTAGAATCAATCAGTGAGCCCAGCAAGCGCGCAGCCTGCGAGAGGCGAGCCCTTGAATTGGCTAAGTTACTTCTAAAGCAAAGGCGAAATTTCACTTCCATTTCTCAGGTCATTTCTGCCATTCGTGAACTCCATTAA 1173 46.29 MAFSEFRPLDESSLIEYIKTVPSLSDKLGNKFDDIQIKEIGDGESWPMTKERAYFEAVALRKHGLLCPNHVPDVYHFDRTMSLIGMRYLEPPHIILRKGLIAGIEYPLLADHVTEYMAKTLFGTSILYNSTTVHKESVAEFCGNVELCRLTEQVVFSDPYKVSEYNRWTSPYLDHDAEAVRNDNDLKVEIAELKAKFIERTQALVHGDLHTGSIMVTQESTQVIDPEFAFYGPMGFDIGAFLGNLILAFFSQDGHAVEGNDRNAYKEWILRTIEETWNLFRKKFVGLWELHKDGPGEAYLPAIYDNPELQQLVQNKYLTDLFHDSLGFGAAKMIRRIVGVAHVEDLESISEPSKRAACERRALELAKLLLKQRRNFTSISQVISAIRELH 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1663328 1666481 - CmoCh16G003620.1 Cmo16g00362 399397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00362 390 TIGRFAM MTRK: S-methyl-5-thioribose kinase 43 386 IPR009212 GO:0009086|GO:0046522
Cmo16g00362 390 Gene3D - 93 389 - -
Cmo16g00362 390 PANTHER METHYLTHIORIBOSE KINASE 2 43 - -
Cmo16g00362 390 Pfam Phosphotransferase enzyme family 52 242 IPR002575 -
Cmo16g00362 390 PANTHER METHYLTHIORIBOSE KINASE 2 43 - -
Cmo16g00362 390 SUPERFAMILY Protein kinase-like (PK-like) 5 388 IPR011009 -
Cmo16g00362 390 Gene3D Phosphorylase Kinase; domain 1 43 92 - -
Cmo16g00362 390 PANTHER METHYLTHIORIBOSE KINASE 43 389 - -
Cmo16g00362 390 PIRSF MTRK 1 44 IPR009212 GO:0009086|GO:0046522
Cmo16g00362 390 PIRSF MTRK 43 390 IPR009212 GO:0009086|GO:0046522
Cmo16g00362 390 PANTHER METHYLTHIORIBOSE KINASE 43 389 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00362 K00899 mtnK; 5-methylthioribose kinase [EC:2.7.1.100] - csv:101222633 701.049
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g639 Blo02g00951 . . . . . Bma05g00679 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1005 Cone10ag1023 . . . . . . . . . Bpe05g00494 . . . . Cmo16g00362 . . . . Cpe14g00280 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006086 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 1 1 2 2 2 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00362 Cmo_Chr16 FPKM 16.853121 18.16189 15.395014 14.472934 17.102612 17.419451 17.498497 12.133653 9.889525 10.25071