Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00366 ATGTCCATGGTAGGACCTAATCCTTCTCGTCGCATTTCTGTCCATCAAGCGCTCGGCGGTGGTCAAGTGGCTGATTTGCTGTTATGGAATAAATGGTATGGTGGGGTGGTGACGCTCACGTCTGCAACTTCTTTCTGGTACCTGTTTGAAAGAGCCGGTTACAACTTCTTATCTTTTGTCGCCAATGTTCTATTGCTTCTTGTCCTCATTATTTTTTTCTGGGCCAAATCTGCTTCCCTTCTCAATAGGTACTTTGATTCCCCTTCTTCCAGCTTTCAGTGTTTAACATTTCTTGGGTCGAAGTCTGTGGAGAGTTTATGGTTGATGATGAATCAAAAACCTCTACCTCCGCTTCCTGATCTGGAAATTTCTGAGGAAACTGTTTCAGTGGTTGCTGATGAACTGCGACTGTGGGTCAATTTTGTACTGTCAATTGCACGTGATATTGCAATAGGCAGAAACTTTAAGCTCTTTCTTCAGGTTGCTCTTGGACTGTGGATTGTGTCATTCATTGGCAGTTTCTTCAATTTTCTTACACTGGTTTATATTGGTATCCTTCTCAGTCTTTCCGCTCCTTTAGTGTATGATAAGTATCAGGATCACATCAATGAAAAGTTATGTGTAGCACATAGATACGTACAGATGCAATACAGGATGCTTAACGAGAATATCCAAAGGACGAAAGCTGAAGACAAAGAGGATGCATGCATGCGTCTATTAGGGAGACCAATTACTTGCTGGAGAACAGAACCCAGAAAGATGATGCAAGATCTGTTGCAGAACAGGAATTCATGGAACTTCTTCGATGCCACTAACAAGGCTCTGTTTTGGAGCTTCACTTTCTTTTTCCCTCTCCTTCATTTTCCCTCTTTTGCTCTTAACAGCGATGGCGCCCTCTTGTTGTCTCTCAAACGCTCCATTCTCGGCGATCCCTTGTCCGTTTTCGCTAATTGGAATGTTTATGATGCCACACCCTGTTCCTGGCGTGGAGTCACCTGCACCGACCTCCGTGGCTATGGCGGCGGATGGCCGGATTTGCTCAGAGTCACTGCCGTCTCACTCCCTGGCAGCCAGCTTCTGGGTTCCATTCCTGATGAGCTGGGAAGGATCGAACACCTTCGTCTTCTTGATCTTTCCGGTAATTTCTTTAATGGGTCTCTCCCGGTTTCCATTTTCAATGCTTCGGAGCTTCAGATTCTTTCTCTTTCGAACAATGTAATCTCCGGGGAGTTGCCGGCGGATATTGGGGGTTTGAAGAGTCTTCAGGTTTTGAATCTGTCTGATAATGCGTTGGCCGGGAAAGTGCCCGGAAATCTCACTGCTCTGAAGAATCTCACCGTCGTTTCTCTGAGGAGTAATTATTTCGTCGGAGAGATTCCTGGGAATTTCAGTTGGGTTGAGGTTTTGGATTTGTCTTCTAATTTGCTCAATGGGTCTTTGCCGGCGGATTTCGGTGGGGAAAAACTACGGTCTTTGAACTTCTCTTACAATAAAATTTCAGGTCCCGTTCCACCGGAGTTCGCGAAGTGGATTCCGGCGAATGCGACGATGGATCTCTCTTTCAACAATCTCACCGGAGCGATTCCTCAGTCGGCTGCTCTGCTCAGCCAGAAAACAGAGGCGTTCGCCGGAAATGAGGATCTCTGTGGGAAGCCATTGAAGCACCTCTGTTCGATTCATTCCTCACTAACAATTCCCCCAAATGTTTCTGAAATTTCATCTTCTTCTCCGGCAATCGCCGCCATACCGAAAACAATCGGCTCTATTCCAGCAACAAAGTCCCCCGGAGGTCCAAACGGGACGCAAACTTCTCAGCCGCAAAACACCATGAAACCCATCACAATAGCCGCAATCGCGGTCGGAGACCTTGCCGGAATCACCATTCTGGCCATCGGGATTCTCTACGTCTACCATCACCGGAAACAAACAAGTCCCAATTCCAAAACCTCTAAATCCGCCGAGAAGAAGCCGCCGATTGGCTCAGACCAAGACCGCCATAACACCCAAAAAAAACCTTCATCGGTGTTGTTCTGTTTGGCCAACAAAGGAGAAGATACATCGGAGGCGACAAGTTCTTCCGACGGCGAAGAACAGAGGGAGCAATCCGGAGCAAACTACGGCGGAGTGAACAGAGACAGTAAGAAAAACGGCGTGCTGGTGACATTGGACGGAGAAACGGAGATGGAATTGGAGACATTGTTAAAGGCGTCAGCATATATACTTGGAGCAAGTGGCGGAAGCATCGTGTACAAGGCGGTGCTGGAGGACGGTACGGCGTTCGCCGTCAGAAGGATCGGCGACGTCAACTTTGAGAGATTGAGGGATTTCGAGGCGCAAATGAGAGCCATTGCTAAGCTTCGACATCAAAATTTGGTGAAAATTCGCGGGTTCTTTTGGGGAGAAGATGAAAAGCTCATAATCTATGATTACGTCTCCAATGGCTGCCTTGCAACCTCCATTCACAAAAAACAGAGTTCATCGTCTTCTTCCCAGATCCATCTATCATTTGAAGTCCGACTGAAAATCGCCAGAGGAATCGCCAGAGGAATGGCTTTCATCCACGACAAGAAGCACGTCCATGGCAACCTGAAGCCTTCCAACATCCTGTTAAACGCCGACATGGAGCCCTTAATCACCGATCTCGGCCTCAACAAGCTCCTCTCCCGCAGTTCCAAGATCGCCTTCGCCTCCACTTCATCCCGGAACTTCGGCAGCCACAGATCCACGCCGAATCGCGATCACCATGACGGCGGCGGCGGCGGAGGAAGCCCCGCTGTGAGTATGGGATCGGCGTACCAGGCGCCGGAATCGCTGAAGAATCTGAAACCGAGCCCTAAATGGGACGTGTACTCGTTCGGGTTGATTCTGGTGGAGCTTCTGAGCGGGAAAATTGTGAGGGAGAGGGAGGGCGGCGTTGAAGACGAGGGGCGGATGAAGAAGATGGTGGATCCGACTATTAGAGGGGAATTGGAAGGGAAAGAGGAGGCTGTAATGGAGATTTTTAGATTAGGGTTTAGGTGTGCTTGCTTTGTGCCTCAAAAGAGACCCACCATGAGAGAGGCTGTCCAAGTTCTGGAAAAAGTTTGTTCTTCCTAG 3096 48.51 MSMVGPNPSRRISVHQALGGGQVADLLLWNKWYGGVVTLTSATSFWYLFERAGYNFLSFVANVLLLLVLIIFFWAKSASLLNRYFDSPSSSFQCLTFLGSKSVESLWLMMNQKPLPPLPDLEISEETVSVVADELRLWVNFVLSIARDIAIGRNFKLFLQVALGLWIVSFIGSFFNFLTLVYIGILLSLSAPLVYDKYQDHINEKLCVAHRYVQMQYRMLNENIQRTKAEDKEDACMRLLGRPITCWRTEPRKMMQDLLQNRNSWNFFDATNKALFWSFTFFFPLLHFPSFALNSDGALLLSLKRSILGDPLSVFANWNVYDATPCSWRGVTCTDLRGYGGGWPDLLRVTAVSLPGSQLLGSIPDELGRIEHLRLLDLSGNFFNGSLPVSIFNASELQILSLSNNVISGELPADIGGLKSLQVLNLSDNALAGKVPGNLTALKNLTVVSLRSNYFVGEIPGNFSWVEVLDLSSNLLNGSLPADFGGEKLRSLNFSYNKISGPVPPEFAKWIPANATMDLSFNNLTGAIPQSAALLSQKTEAFAGNEDLCGKPLKHLCSIHSSLTIPPNVSEISSSSPAIAAIPKTIGSIPATKSPGGPNGTQTSQPQNTMKPITIAAIAVGDLAGITILAIGILYVYHHRKQTSPNSKTSKSAEKKPPIGSDQDRHNTQKKPSSVLFCLANKGEDTSEATSSSDGEEQREQSGANYGGVNRDSKKNGVLVTLDGETEMELETLLKASAYILGASGGSIVYKAVLEDGTAFAVRRIGDVNFERLRDFEAQMRAIAKLRHQNLVKIRGFFWGEDEKLIIYDYVSNGCLATSIHKKQSSSSSSQIHLSFEVRLKIARGIARGMAFIHDKKHVHGNLKPSNILLNADMEPLITDLGLNKLLSRSSKIAFASTSSRNFGSHRSTPNRDHHDGGGGGGSPAVSMGSAYQAPESLKNLKPSPKWDVYSFGLILVELLSGKIVREREGGVEDEGRMKKMVDPTIRGELEGKEEAVMEIFRLGFRCACFVPQKRPTMREAVQVLEKVCSS 1031
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1674648 1682608 + CmoCh16G003660.1 Cmo16g00366 399401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00366 1031 SUPERFAMILY L domain-like 294 555 - -
Cmo16g00366 1031 Gene3D Ribonuclease Inhibitor 464 554 IPR032675 -
Cmo16g00366 1031 Pfam Protein kinase domain 741 1023 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00366 1031 Gene3D Transferase(Phosphotransferase) domain 1 811 1031 - -
Cmo16g00366 1031 MobiDBLite consensus disorder prediction 587 607 - -
Cmo16g00366 1031 Gene3D Phosphorylase Kinase; domain 1 705 810 - -
Cmo16g00366 1031 Pfam Reticulon 23 206 IPR003388 -
Cmo16g00366 1031 MobiDBLite consensus disorder prediction 898 929 - -
Cmo16g00366 1031 Pfam Leucine rich repeat N-terminal domain 294 333 IPR013210 -
Cmo16g00366 1031 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 288 1028 - -
Cmo16g00366 1031 MobiDBLite consensus disorder prediction 592 607 - -
Cmo16g00366 1031 MobiDBLite consensus disorder prediction 685 710 - -
Cmo16g00366 1031 SUPERFAMILY Protein kinase-like (PK-like) 740 1025 IPR011009 -
Cmo16g00366 1031 Pfam Leucine rich repeat 372 431 IPR001611 GO:0005515
Cmo16g00366 1031 Gene3D Ribonuclease Inhibitor 293 463 IPR032675 -
Cmo16g00366 1031 MobiDBLite consensus disorder prediction 642 672 - -
Cmo16g00366 1031 ProSiteProfiles Reticulon domain profile. 23 234 IPR003388 -
Cmo16g00366 1031 ProSiteProfiles Protein kinase domain profile. 735 1028 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00366 1031 PANTHER OS04G0122200 PROTEIN 288 1028 - -
Cmo16g00366 1031 MobiDBLite consensus disorder prediction 655 669 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00508 Cmo16g00366 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00085 Cmo-Chr14:409183 Cmo16g00366 Cmo-Chr16:1674648 7.37E-29 dispersed
Cmo16g00366 Cmo-Chr16:1674648 Cmo20g00981 Cmo-Chr20:5488146 0 dispersed
Cmo04g00508 Cmo-Chr4:2523908 Cmo16g00366 Cmo-Chr16:1674648 0 transposed
Cmo16g00366 Cmo-Chr16:1674648 Cmo04g00507 Cmo-Chr4:2517550 1.12E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74955 PF00069 Pkinase 3.00E-30 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00366 - - cmax:111478916 1177.16