Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00367 ATGGCTACTTCCGCTTCGTTTACGCTCCGTAGGCCGGCGCTTGGGAACTCGGTACTTTCTTCTCTGTCTTCTAAGATTCCTGTTCCTTCGGCTTTTTCTGTTGATCTTCGTCGACGGAGTGTTGGCGCGCCGCGGTTTGTGGTGTTGGTTTCTGCGTCTATGGATGCGAAGCCGACGGTTCTTGTTGCGGAGAAGCTGGGTGAAGCGGGTCTTGATCTTCTCAAGGATTTTGCTAATGTTGATTGCTCGTATAATCTGAGTCCTGAGGAGCTTTGCACCAAGATCTCGCTCTGTGATGCGATTATTGTGCGGAGTGGGACTAAGGTCAGCCGTGAGGTGTTTGAATCCTCTGGAGGGAGGTTGAAGGTCGTTGGGAGGGCTGGTGTTGGCATTGACAACGTGGATCTGGCGGCGGCCACTGAGCATGGTTGCTTAGTGGTGAATGCTCCGACTGCAAACACGGTAGCCGCCGCTGAGCACGGAATTGCGCTTTTGACTGCAATGGCCAGAAATGTTGCTCAAGCCGATGCGTCTGTTAAAGCTGGAAAGTGGCAACGCAACAAATATGTCGGTGTATCGCTTGTGGGGAAAACACTGGCTGTAATGGGATTCGGCAAAGTTGGAACTGAAGTTGCTCGGCGTGCAAAGGGACTTGGCATGCATGTAATTGCACACGACCCATATGCCCCAGCTGATCGTGCTCGTGCGATAGGCGTAGAGCTTGTGAGCTTTGACGAAGCCATTGGAACTGCTGATTTCATCTCTTTGCATATGCCTTTAACTCCAGCCACGTCAAAGATCCTTAATGATGAGAATTTTGCAAAGATGAAGAAAGGAGTAAGGATTGTGAATGTTGCCCGCGGAGGCGTAATTGATGAAGAAGCTCTTGTAAGGGCGCTAGATGCTGGAATTGTTGCTCAGGCTGCACTTGATGTTTTCACTGAGGAACCACCTCCTAAAGATAGCAAGTTGATTCAGCATGAGAATGTCACTGTAACTCCTCATCTGGGTGCCAGCACAATGGAGGCTCAGGAAGGAGTTGCTGTTGAAATAGCTGAAGCTGTTGTTGGAGCCTTGAAAGGGGAGCTTGCGGCTACTGCTGTCAATGCTCCGATGGTTCCTGCAGAGGTGTTAACGGAGCTGAAACCATTTGTTGAACTTGCTGAGAAATTGGGAAGACTGGCTGTCCAATTGGTAGCAGGAGGAAGCGGTGTGAAAACTGTGAAAGTAACATACGCTTCCTCTAGAGCTCCTGATGATCTTGACACCAGGCTTCTTCGTGCCATGATAACCAAAGGTCTCATAGAACCGATTTCCAGTGTTTTCGTGAACTTGGTGAATGCTGACTTCACCGCCAAACAGAGAGGACTAAGGATATCCGAGGAGCGAGTCATTCTGGACGGGTCGCCTGAGAAACCATTAGAATACATACAGGTCCAGATTGCCAACGTGGAATCCAAATTTGCCAGTGCTATATCGGATTCTGGGGAGATAACAGTGGAAGGACTTGTGAAAGATGGAATCCCTCACCTCACAAAGGTCGGGTCTTTCGAAGTCGATGTTAGTTTGGAGGGTAGCATCATACTCTGTAGGCAGGTTGACCAGCCAGGTATGATTGGAACGGTTGGAAGCATTCTCGGAGAAGAAAATGTTAATGTGAGCTTCATGAGTGTTGGAAGGATTGCTCCTCGAAAGCAGGCTGTTATGGCCATTGGTGTCGATGAACAGCCCAGCAAGGAATCCTTGAAGAGGATCGGTGATGTTCCAGCAATTGAAGAGTTTGTTTTCCTCAAGCTGTAG 1800 49.22 MATSASFTLRRPALGNSVLSSLSSKIPVPSAFSVDLRRRSVGAPRFVVLVSASMDAKPTVLVAEKLGEAGLDLLKDFANVDCSYNLSPEELCTKISLCDAIIVRSGTKVSREVFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMHVIAHDPYAPADRARAIGVELVSFDEAIGTADFISLHMPLTPATSKILNDENFAKMKKGVRIVNVARGGVIDEEALVRALDAGIVAQAALDVFTEEPPPKDSKLIQHENVTVTPHLGASTMEAQEGVAVEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVTYASSRAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGLRISEERVILDGSPEKPLEYIQVQIANVESKFASAISDSGEITVEGLVKDGIPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGTVGSILGEENVNVSFMSVGRIAPRKQAVMAIGVDEQPSKESLKRIGDVPAIEEFVFLKL 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1684042 1687295 + CmoCh16G003670.1 Cmo16g00367 399402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00367 599 CDD PGDH_4 60 362 - -
Cmo16g00367 599 Pfam ACT domain 527 588 IPR002912 -
Cmo16g00367 599 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 60 369 IPR006139 GO:0016616|GO:0051287
Cmo16g00367 599 Gene3D - 526 599 - -
Cmo16g00367 599 SMART AdoHcyase_NAD_2 187 356 IPR015878 -
Cmo16g00367 599 SUPERFAMILY Serine metabolism enzymes domain 375 521 IPR029009 -
Cmo16g00367 599 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 199 226 IPR029752 -
Cmo16g00367 599 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 247 269 IPR029753 -
Cmo16g00367 599 TIGRFAM PGDH: phosphoglycerate dehydrogenase 60 598 IPR006236 GO:0004617|GO:0006564
Cmo16g00367 599 Gene3D - 373 525 IPR029009 -
Cmo16g00367 599 PANTHER FORMATE DEHYDROGENASE 1 35 594 - -
Cmo16g00367 599 SUPERFAMILY ACT-like 517 595 IPR045865 -
Cmo16g00367 599 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 338 IPR036291 -
Cmo16g00367 599 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 162 337 IPR006140 GO:0051287
Cmo16g00367 599 Gene3D - 153 335 - -
Cmo16g00367 599 Gene3D - 62 362 - -
Cmo16g00367 599 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 57 190 - -
Cmo16g00367 599 CDD ACT_3PGDH-xct 528 599 - -
Cmo16g00367 599 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 276 292 IPR029753 -
Cmo16g00367 599 ProSiteProfiles ACT domain profile. 527 599 IPR002912 -
Cmo16g00367 599 PANTHER D-3-PHOSPHOGLYCERATE DEHYDROGENASE 35 594 - -
Cmo16g00367 599 Pfam D-3-phosphoglycerate dehydrogenase intervening domain 380 487 IPR045626 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00367 K00058 serA, PHGDH; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] - csv:101221689 1074.31
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00509 Cmo16g00367 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00028 Cmo-Chr1:101361 Cmo16g00367 Cmo-Chr16:1684042 0 dispersed
Cmo14g00663 Cmo-Chr14:3365756 Cmo16g00367 Cmo-Chr16:1684042 4.02E-28 dispersed
Cmo14g01258 Cmo-Chr14:10592170 Cmo16g00367 Cmo-Chr16:1684042 0 dispersed
Cmo16g00367 Cmo-Chr16:1684042 Cmo17g00764 Cmo-Chr17:7456560 1.40E-28 dispersed
Cmo19g00752 Cmo-Chr19:7676439 Cmo16g00367 Cmo-Chr16:1684042 2.17E-28 dispersed
Cmo16g00367 Cmo-Chr16:1684042 Cmo04g00509 Cmo-Chr4:2528288 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g618 Blo02g00840 . . Bda08g00769 . . Bma05g00525 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g00509 Cmo16g00367 . . . . Cpe14g00284 Cpe01g00426 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001181 3 2 4 3 3 1 4 2 2 2 2 2 3 2 2 4 2 6 4 2 2 2 3 2 2 2 2 3 2 3 78
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00367 Cmo_Chr16 FPKM 55.216877 53.062599 46.739258 44.743263 32.511414 35.430058 33.088024 47.370262 51.779884 47.20715