Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00372 ATGGCTTCCTTCTCTTCTCTCTCAACCTTCTTCCTCCTCCTTCCTCTCACCTTCCTTCTACTTTCCCCTCCCTCTCCGGCGAAGGCTCGGCCGGCGGCCGGCGACGGTCAACCCAACTCCCGAGGTGCCCTGGAAATAATCATCGGTGGCGGACCCGACCCGGACCCGAACCCGGAAACTCCGGAAATCCCGCCGGTTCCATGTCCGCCGCCGCCGCCGGAGTTCGAGAACGAGCGGCTGAAAAAGGCTTACTTTGTGATACAGAGACTGAAAAGAAAAATCACCGGCGGGAGGATGGATGTGGTGAAGACATGGAAGGGGAAGGACGTGTGCCGTTATAAAGGATTCCGATGCGACCATTTACCGGACGGGATGAAAGAGAGGACGGTGTCGGCGGTGAGCTTTACTGGGTTCAAATTTGAAGGTCCGGAGCTGTTTCTTGAAGGATTTATGGATGAATTGGATGATATTGCTGTGTTTCATGTCAATTCCAATTTCTTTGTTGGCCCGATTCCCGAGAAAATTAATCGCCAACGATTCTTCTTTGAGATGGATCTTAGTAACAACAAACTTCCCGGGGAATTTCCGACAAACGTGTTGGGAGCAACGGAGCTAACATTCCTCGATCTTCGTTACAACAACTACTGTGGACCAATTCCAGAGCAAATATTCAACATGGACATAATCAGCGCAATTTACATAAACAACAACCAATTCAGTTCAAATCTTCCGTACAATCTAGGGAGAACTCCAGCCAAGTACCTGACATTCGCCAACAACCAGTTGTCGGGACCGATCCCGAGAAGCATCGGGGACGCGAAGAAGACGATGGAAGAAATTGTGTTCTTCAATAACCAATTGGAAGGGTGTTTGCCGTTCGAGATCGGTTACTTGGAAAACGCCGTGTTGTTCGACGCAGGGAAGAATCGCCTGACCGGACCCATACCGCTGTCCTTGGCTTGCATGGGCAAGATGGAGCATCTGTATTTGGCGGACAACCAATTGTACGGACCGGTGCCGGAGGAAATCTGCAAGTTACCTAAACTTGGTAACTTCACGTTGAAGAACAATTTCTTCACTCAGGTGGGACCACACTGCAAGAAGCTAATAAAAAAGAAAATTCTAGACGTTTCGAACAACTGCATACCAGGACTCAAGAAGCAAAGATCTGAAGCAGAATGTGCAGAGTTTGCATACCGACCCAAATACTGCGGGGACGACGAGTCGTTCACGTACATTCCTTGCAAAAACAATCACTATTTTCATCCTCACGTCTCTAAACCTAACAATAACGTAAATTACGTGTCGCCAAAGAAAACGTACGCAGCTCTCACTCCTGAGCCCCAATAA 1350 48.89 MASFSSLSTFFLLLPLTFLLLSPPSPAKARPAAGDGQPNSRGALEIIIGGGPDPDPNPETPEIPPVPCPPPPPEFENERLKKAYFVIQRLKRKITGGRMDVVKTWKGKDVCRYKGFRCDHLPDGMKERTVSAVSFTGFKFEGPELFLEGFMDELDDIAVFHVNSNFFVGPIPEKINRQRFFFEMDLSNNKLPGEFPTNVLGATELTFLDLRYNNYCGPIPEQIFNMDIISAIYINNNQFSSNLPYNLGRTPAKYLTFANNQLSGPIPRSIGDAKKTMEEIVFFNNQLEGCLPFEIGYLENAVLFDAGKNRLTGPIPLSLACMGKMEHLYLADNQLYGPVPEEICKLPKLGNFTLKNNFFTQVGPHCKKLIKKKILDVSNNCIPGLKKQRSEAECAEFAYRPKYCGDDESFTYIPCKNNHYFHPHVSKPNNNVNYVSPKKTYAALTPEPQ 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1708200 1710934 + CmoCh16G003720.1 Cmo16g00372 399407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00372 449 MobiDBLite consensus disorder prediction 27 74 - -
Cmo16g00372 449 PANTHER BNAC05G26270D PROTEIN 34 446 - -
Cmo16g00372 449 Gene3D Ribonuclease Inhibitor 120 419 IPR032675 -
Cmo16g00372 449 SUPERFAMILY L domain-like 129 382 - -
Cmo16g00372 449 MobiDBLite consensus disorder prediction 54 74 - -
Cmo16g00372 449 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 34 446 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00372 - - - bhj:120079650 710.294
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo16g00372 Cmo19g00661 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00372 Cmo-Chr16:1708200 Cmo19g00609 Cmo-Chr19:6726297 9.38E-133 dispersed
Cmo16g00372 Cmo-Chr16:1708200 Cmo16g00373 Cmo-Chr16:1713067 4.34E-101 tandem
Cmo01g01877 Cmo-Chr1:13578534 Cmo16g00372 Cmo-Chr16:1708200 1.91E-105 wgd
Cmo11g01379 Cmo-Chr11:9632804 Cmo16g00372 Cmo-Chr16:1708200 4.11E-130 wgd
Cmo16g00372 Cmo-Chr16:1708200 Cmo19g00607 Cmo-Chr19:6722807 2.14E-147 wgd
Cmo16g00372 Cmo-Chr16:1708200 Cmo04g00513 Cmo-Chr4:2544714 0 wgd
Cmo16g00372 Cmo-Chr16:1708200 Cmo09g00246 Cmo-Chr9:1112645 4.54E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g563 . . . . . . . . Cmo19g00661 . . . . . . . Cpe15g00525 Bhi05g01201 . . . . . . Cla02g00543 . . . . . . . . . . . Csa07g00783 . Cme01g01469 . . . Bda14g00541 . . . . . . Cmo16g00372 . Cma19g00651 . Car19g00495 . . . . . . . . . . . . . . . . Lsi11g01072 . Chy01g00820 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000853 1 2 2 1 2 3 4 3 3 3 3 3 5 3 3 5 3 6 4 3 3 2 1 4 4 4 2 4 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00372 Cmo_Chr16 FPKM 9.12298 10.607957 451.19812 447.150391 2.185985 1.941261 1.869862 0.0 0.432693 0.0