Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00379 ATGGCGGCGGCCACCGCACTGAGCAGAGCTTTGTTTCTAATGGGGTTTCTTCTATTTCTTCAGCTGCAGCTTCCAGAAACAATGGCGGATTGTCCCTTGAATTTGAGTGGATCAAACTTTACTTTAGTTGCTTCTATTTGCTCTAATCCCAATGAAAGAGGGAAGTGCTGCCGCTATATCAATGCATTTGTTGCAGTTTCTGTGGCTCAGCTTGCAAATTCAACTGGTGAACTAGGAGTTTCTTCAAACTTAACCAACATTTGCCTGCAATCTATATCTCAAACCATGGAACTATATGGAGTTCCTAGAAATGCCATGGTTTTCTGTGGGGTTGGAACGAAAATTCCAGTAAACTACGCGTGTAGAGGCCGAGAAACCGTCACGCAGATGCTGGAATCTCCGAAGTTCACGAAAGTTGGGGAGAATTGCAGAGTGCTGCTATCAGAGGAGAGTGCTTGTAGGAAGTGTATCAATGCTGGGATTTTATATCTCCGCAATCTTATTGGGAGAGAAGATAATATAACATTGAATACCTGTCGTGATGCTACGTTTGTTGCACTTGCTAGCCAACTTGATGCTGCTTCAGTGATTGATCTTGCAAGCTGCTTCTTTGGAGTTCAAGGTCTTAACAGGCCTCCAGCTCCACCTCCATCTTCGGCTACCCAGGATATTTCCCCAAGTCCATCAGCTGCTGCAAGTCCCGGGCCACTGGCGCTAGGTGTTTCTGATGGTAAACGTCATCGACATCATTCCTACCATGTAACATTAGTGGCAGGCATTGGCATTGCAGTGACTGTAGCTTCTGTAATGATGCTGGTTGTCTTGATTATGCTGATCCGAAGGAAAAGCAGAGAGCTAAAGGATTCCGAGAAGACGGATGCGAACTCTTCAAGATCCTTCCCTTCTCGTCCCATCAAAAAGTATCAGGAAGGACCTTCCATGTTTAAAAAGTTCAGCTATAAGGAGATCAAGAAGGCAACAGATAGTTTTAGTACAACAATTGGACAAGGAGGATATGGGACTGTTTATAAAGCTCAATTCAGTGAAGACTTAGTGCTAGCTGTGAAGAGGATGAACAAAGTCTCCGAGCAGGGGGAGGATGAATTTGGCAGAGAAATCGAGCTGCTTGCGAGATTACATCACCGACATCTCGTTGCTTTAAGAGGCTTTTGTGTCGAGAAGCATGAACGGTTTCTTGTGTATGAGTATATGGCTAATGGAAGCTTGAAGGATCATCTTCATGCTCCTGGCAGGACCCCTCTAAGTTGGCAGACAAGAATCCAAATCGCCATCGATGTCGCTAATGCTCTGGAGTACCTTCACTACTATTGTGATCCCCCACTGTGTCATAGAGACATCAAGTCCAGCAACATTTTGCTGGATGAGAACTTTGTTGCTAAGGTTGCCGATTTTGGCCTTGCACATGCTTCAAAGGGTGGTTCGGTTTTCTTTGAACCCGTTAATACCGATATCCGGGGAACGCCAGGTTATATGGATCCCGAGTATGTTATCACGCAAGAGCTTACCGAGAAAAGTGATATATACAGCTACGGCGTGCTACTTCTGGAAATAGTTACAGGCAGACGGGCGATACAAGACGGGAAGAACTTGGTTGAATGGTCCCTGGCGTACATGATTTCAGATTCGAGGATATCCGAACTAGTAGATTCAAGTATCAAGAGTTCTTTTAATTTGGACCAACTTCACACAGTGGTGTCAATTGTGAGATGGTGCACTGAGGGAGAAGGCAGGGCGAGGCCCTCGATTAAACAGGTGCTTCGACTATTGTACGAGAGTTCGGACCCGATGCATCAAGGGCTCAAAGAAGCTGTTGACGATGAAGAATATGGAGGCAATGAAGGGAGGCAGAGCATGAGCAAGAGAAAAATGCATAAAAGTGATGTGATTTTTCAGTGTGGAGATGGAAGGTACCTTGCTTCTTCATCAAGCACATCTAGATCATATTGTAGTAGAAGCTTTTTGCTTGAAACTGGTTCCCCACAGTCTCCTCCCAATATTTTGTCTGTCTCAGACCAATTATTTTAG 2046 44.97 MAAATALSRALFLMGFLLFLQLQLPETMADCPLNLSGSNFTLVASICSNPNERGKCCRYINAFVAVSVAQLANSTGELGVSSNLTNICLQSISQTMELYGVPRNAMVFCGVGTKIPVNYACRGRETVTQMLESPKFTKVGENCRVLLSEESACRKCINAGILYLRNLIGREDNITLNTCRDATFVALASQLDAASVIDLASCFFGVQGLNRPPAPPPSSATQDISPSPSAAASPGPLALGVSDGKRHRHHSYHVTLVAGIGIAVTVASVMMLVVLIMLIRRKSRELKDSEKTDANSSRSFPSRPIKKYQEGPSMFKKFSYKEIKKATDSFSTTIGQGGYGTVYKAQFSEDLVLAVKRMNKVSEQGEDEFGREIELLARLHHRHLVALRGFCVEKHERFLVYEYMANGSLKDHLHAPGRTPLSWQTRIQIAIDVANALEYLHYYCDPPLCHRDIKSSNILLDENFVAKVADFGLAHASKGGSVFFEPVNTDIRGTPGYMDPEYVITQELTEKSDIYSYGVLLLEIVTGRRAIQDGKNLVEWSLAYMISDSRISELVDSSIKSSFNLDQLHTVVSIVRWCTEGEGRARPSIKQVLRLLYESSDPMHQGLKEAVDDEEYGGNEGRQSMSKRKMHKSDVIFQCGDGRYLASSSSTSRSYCSRSFLLETGSPQSPPNILSVSDQLF 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1744813 1749666 + CmoCh16G003790.1 Cmo16g00379 399414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00379 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Cmo16g00379 681 SUPERFAMILY Protein kinase-like (PK-like) 309 597 IPR011009 -
Cmo16g00379 681 MobiDBLite consensus disorder prediction 286 305 - -
Cmo16g00379 681 Pfam SPARK 29 161 IPR043891 -
Cmo16g00379 681 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Cmo16g00379 681 SMART serkin_6 328 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00379 681 Gene3D Phosphorylase Kinase; domain 1 290 403 - -
Cmo16g00379 681 PANTHER OS01G0750732 PROTEIN 9 676 - -
Cmo16g00379 681 ProSiteProfiles Protein kinase domain profile. 328 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00379 681 MobiDBLite consensus disorder prediction 213 243 - -
Cmo16g00379 681 PANTHER BNAC06G02630D PROTEIN 9 676 - -
Cmo16g00379 681 CDD STKc_IRAK 334 596 - -
Cmo16g00379 681 Pfam Protein kinase domain 332 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00379 681 Gene3D Transferase(Phosphotransferase) domain 1 404 618 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00379 Cmo-Chr16:1744813 Cmo03g01453 Cmo-Chr3:10495984 2.27E-75 dispersed
Cmo16g00379 Cmo-Chr16:1744813 Cmo04g00522 Cmo-Chr4:2593644 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74956 PF00069 Pkinase 1.80E-49 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00379 - - csv:101219079 1192.95